1ZX8A

Crystal structure of an atypical cyclophilin (peptidylprolyl cis-trans isomerase) (tm1367) from thermotoga maritima at 1.90 a resolution
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
127
structure length
127
Chain Sequence
HHHMRVELLFESGKCVIDLNEEYEVVKLLKEKIPFESVVNTWGEEIYFSTPVNVQKMENPREVVEIGDVGYWPPGKALCLFFGKTPMSDDKIQPASAVNVIGKIVEGLEDLKKIKDGEKVAVRFASS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of TM1367 from Thermotoga maritima at 1.90 A resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold.
pubmed doi rcsb
molecule tags Unknown function
source organism Thermotoga maritima
molecule keywords hypothetical protein TM1367
total genus 32
structure length 127
sequence length 127
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2005-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04126 Cyclophil_like Cyclophilin-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.100.20 Mainly Beta Beta Barrel Cyclophilin Cyclophilin 1zx8A01
1ZX8A 2NNZA 2KA0A 3X27A 3KOPA
chains in the Genus database with same CATH superfamily
4N1OA 3O7TA 2A2NA 3X27A 1ZMFA 4J5CX 4N1QA 1W74A 1M9XA 2ALFA 2NNZA 1DYWA 5KV1A 5KULA 2X2DB 5KV3A 1CYNA 1LOPA 3RCFA 2POEA 3VA7A 5KUNA 2CFEA 1AWSA 3R4GA 1ZKCA 3BO7A 2OJUA 1E3BA 1XYHA 5F66A 2IGWA 4J5EX 4YUHA 1CWOA 2X2CK 1AWUA 2POYA 1MZWA 3JB9d 5KURA 1M9CA 5KUQA 1AWQA 3K0MA 3OPFA 3QYUA 1QOIA 2CK1A 1VDNA 5KUWA 2OSEA 4N1SA 3ODLA 2BIUX 4DGAA 5CBTA 1VBSA 2Z6WA 5CCQA 4YUJA 3K0NA 3RDAX 2B71A 2X25B 1CWJA 3UCHA 4DGDA 1ZX8A 4LQWA 1ISTA 1VBTA 4YUNA 1A58A 2KA0A 3OEPA 5CCRA 3RDCA 5CCNA 1RMHA 1XWNA 4J58A 5KV5A 4ZSCA 2C3BA 3KOPA 1XQ7A 1CWBA 2WLWA 4FRUA 4DGEA 1NMKA 3K0QA 5KV7A 1H0PA 5KUVA 3MMLA 3PMPA 3R54A 2P0OA 3MMLB 4S1JA 4EYVA 1CWIA 3R59A 2R99A 3RDBA 5KV0A 4N1NA 1AWTA 4CYHA 5LUDA 2CYHA 1CWCA 4N1MA 1W8VA 2PLUA 1IIPA 2ZP2A 4J59A 5KUOA 2IGVA 4TOTA 1QNGA 3EOVA 1M9DA 4HY7A 4O8IA 2BITX 1YNDA 1ZKFA 2WFJA 2X2AA 2MS4A 2ESLA 4N1RA 4YUPA 3RCKX 2XGYB 3RDDA 4N1PA 1W8MA 4YULA 1MF8C 1M9FA 3ICHA 3CYSA 4DGBA 3K2CA 1Z81A 1AWVA 4E1QA 3CYHA 1CWLA 4DGCA 2HAQA 4JJMA 2RS4A 3R57A 4ZSDA 1QNHA 3RCGA 5KV4A 5CCSX 5JHEA 1CWHA 4J5AX 5CBUA 1M9EA 3T1UA 3K0PA 2RMAA 2RMCA 2PHCB 2WFIA 1BCKA 1CWKA 4JCPA 3K0RA 3RCIX 4XNCA 4O8HA 2K7NA 1W8LA 4YUGA 3K0OA 3S6MA 5KUUA 3BT8A 5CBVA 4R3EA 2GW2A 2NULA 1IHGA 1AK4A 3BKPA 4J5DX 1AWRA 2MC9A 2FU0A 4YUKA 2HQ6A 4S1EA 5CYHA 1V9TA 1X7FA 1J2AA 2X7KA 1E8KA 5KUSA 1CWFA 1C5FA 4YUMA 1FGLA 2HE9A 2QERA 3R56A 4FRVA 5DUDA 1CWAA 1OCAA 3RCLA 2MVZA 5KV2A 2MZUA 4IPZA 4YUOA 1A33A 1M63C 5CBWA 2OK3A 2X83B 4J5BA 1MIKA 5KV6A 3RD9X 2CMTA 4YUIA 5KUZA 3OREA 1CLHA 2HQJA 3RFYA 1XO7A 2N0TA 3ICIA 3R49A 1CWMA 1VAIA 5A0EA 2CPLA 2RMBA 4I9YA 1M9YA 4R3FA 3ODIA
chains in the Genus database with same CATH topology
1ZX8A 2NNZA 2KA0A 3X27A 3KOPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZX8 A;  2NNZ A;  2KA0 A;  3X27 A;  3KOP A; 
#chains in the Genus database with same CATH topology
 4N1O A;  3O7T A;  2A2N A;  3X27 A;  1ZMF A;  4J5C X;  4N1Q A;  1W74 A;  1M9X A;  2ALF A;  2NNZ A;  1DYW A;  5KV1 A;  5KUL A;  2X2D B;  5KV3 A;  1CYN A;  1LOP A;  3RCF A;  2POE A;  3VA7 A;  5KUN A;  2CFE A;  1AWS A;  3R4G A;  1ZKC A;  3BO7 A;  2OJU A;  1E3B A;  1XYH A;  5F66 A;  2IGW A;  4J5E X;  4YUH A;  1CWO A;  2X2C K;  1AWU A;  2POY A;  1MZW A;  3JB9 d;  5KUR A;  1M9C A;  5KUQ A;  1AWQ A;  3K0M A;  3OPF A;  3QYU A;  1QOI A;  2CK1 A;  1VDN A;  5KUW A;  2OSE A;  4N1S A;  3ODL A;  2BIU X;  4DGA A;  5CBT A;  1VBS A;  2Z6W A;  5CCQ A;  4YUJ A;  3K0N A;  3RDA X;  2B71 A;  2X25 B;  1CWJ A;  3UCH A;  4DGD A;  1ZX8 A;  4LQW A;  1IST A;  1VBT A;  4YUN A;  1A58 A;  2KA0 A;  3OEP A;  5CCR A;  3RDC A;  5CCN A;  1RMH A;  1XWN A;  4J58 A;  5KV5 A;  4ZSC A;  2C3B A;  3KOP A;  1XQ7 A;  1CWB A;  2WLW A;  4FRU A;  4DGE A;  1NMK A;  3K0Q A;  5KV7 A;  1H0P A;  5KUV A;  3MML A;  3PMP A;  3R54 A;  2P0O A;  3MML B;  4S1J A;  4EYV A;  1CWI A;  3R59 A;  2R99 A;  3RDB A;  5KV0 A;  4N1N A;  1AWT A;  4CYH A;  5LUD A;  2CYH A;  1CWC A;  4N1M A;  1W8V A;  2PLU A;  1IIP A;  2ZP2 A;  4J59 A;  5KUO A;  2IGV A;  4TOT A;  1QNG A;  3EOV A;  1M9D A;  4HY7 A;  4O8I A;  2BIT X;  1YND A;  1ZKF A;  2WFJ A;  2X2A A;  2MS4 A;  2ESL A;  4N1R A;  4YUP A;  3RCK X;  2XGY B;  3RDD A;  4N1P A;  1W8M A;  4YUL A;  1MF8 C;  1M9F A;  3ICH A;  3CYS A;  4DGB A;  3K2C A;  1Z81 A;  1AWV A;  4E1Q A;  3CYH A;  1CWL A;  4DGC A;  2HAQ A;  4JJM A;  2RS4 A;  3R57 A;  4ZSD A;  1QNH A;  3RCG A;  5KV4 A;  5CCS X;  5JHE A;  1CWH A;  4J5A X;  5CBU A;  1M9E A;  3T1U A;  3K0P A;  2RMA A;  2RMC A;  2PHC B;  2WFI A;  1BCK A;  1CWK A;  4JCP A;  3K0R A;  3RCI X;  4XNC A;  4O8H A;  2K7N A;  1W8L A;  4YUG A;  3K0O A;  3S6M A;  5KUU A;  3BT8 A;  5CBV A;  4R3E A;  2GW2 A;  2NUL A;  1IHG A;  1AK4 A;  3BKP A;  4J5D X;  1AWR A;  2MC9 A;  2FU0 A;  4YUK A;  2HQ6 A;  4S1E A;  5CYH A;  1V9T A;  1X7F A;  1J2A A;  2X7K A;  1E8K A;  5KUS A;  1CWF A;  1C5F A;  4YUM A;  1FGL A;  2HE9 A;  2QER A;  3R56 A;  4FRV A;  5DUD A;  1CWA A;  1OCA A;  3RCL A;  2MVZ A;  5KV2 A;  2MZU A;  4IPZ A;  4YUO A;  1A33 A;  1M63 C;  5CBW A;  2OK3 A;  2X83 B;  4J5B A;  1MIK A;  5KV6 A;  3RD9 X;  2CMT A;  4YUI A;  5KUZ A;  3ORE A;  1CLH A;  2HQJ A;  3RFY A;  1XO7 A;  2N0T A;  3ICI A;  3R49 A;  1CWM A;  1VAI A;  5A0E A;  2CPL A;  2RMB A;  4I9Y A;  1M9Y A;  4R3F A;  3ODI A; 
#chains in the Genus database with same CATH homology
 1ZX8 A;  2NNZ A;  2KA0 A;  3X27 A;  3KOP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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