2ATZA

Crystal structure of protein hp0184 from helicobacter pylori
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
176
structure length
176
Chain Sequence
EMELKLIKIDTSHYFEKKPGLGERVDYAGRCFYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHKGHTELGEGERLVKTLSMKLAQGLPKEWKVFPSNEWPKEFNILALPYEVFAKERGSSWAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of protein HP0184 from Helicobacter pylori
rcsb
molecule tags Structural genomics, unknown function
source organism Helicobacter pylori
molecule keywords H. pylori predicted coding region HP0184
total genus 43
structure length 176
sequence length 176
ec nomenclature
pdb deposition date 2005-08-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08966 DUF1882 Domain of unknown function (DUF1882)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.920.20 Alpha Beta Alpha-Beta Complex DNA primase, PRIM domain HP0184-like 2atzA00
2ATZA
chains in the Genus database with same CATH superfamily
2FAOA 4BPUA 4BPWA 1V33A 4LIKA 1G71A 4BPXA 4LILA 4RR2A 4LIMA 1ZT2A 4MM2A 1V34A 2FAQA 4MHQA 5EXRA 2FARA 2ATZA
chains in the Genus database with same CATH topology
2ATZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ATZ A; 
#chains in the Genus database with same CATH topology
 2FAO A;  4BPU A;  4BPW A;  1V33 A;  4LIK A;  1G71 A;  4BPX A;  4LIL A;  4RR2 A;  4LIM A;  1ZT2 A;  4MM2 A;  1V34 A;  2FAQ A;  4MHQ A;  5EXR A;  2FAR A;  2ATZ A; 
#chains in the Genus database with same CATH homology
 2ATZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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