2CCLB

The s45a, t46a mutant of the type i cohesin-dockerin complex from the cellulosome of clostridium thermocellum
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
62
structure length
62
Chain Sequence
VLLGDVNGDGTINSTDLTMLKRSVLRAITLTDDAKARADVDKNGSINAADVLLLSRYLLRVI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
TI1 (2-5)TII1 (-1-2)TVIII1 (23-26)TI2 (36-39)EMPTYAH2 (29-35)AH1 (11-22)AH3 (45-56)Updating...
connected with : NaN
molecule tags Cell adhesion
source organism Clostridium thermocellum
publication title Evidence for a Dual Binding Mode of Dockerin Modules to Cohesins.
pubmed doi rcsb
molecule keywords CELLULOSOMAL SCAFFOLDING PROTEIN A
total genus 21
structure length 62
sequence length 62
chains with identical sequence D
ec nomenclature ec 3.2.1.8: Endo-1,4-beta-xylanase.
pdb deposition date 2006-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00404 Dockerin_1 Dockerin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1330.10 Mainly Alpha Orthogonal Bundle Type 1 dockerin domain Dockerin domain 2cclB00
4DH2B 2JNKA 5G5DB 2B59B 5LXVB 4UYQB 4IU3B 2CCLB 4FL4C 2Y3NB 3UL4B 1DAQA 4WI0B 1DAVA 4FL4A 2VN6B 2MTEA 4UYPB 2OZNB 4IU2B 5K39B 4U3SB 4WKZA 3KCPA 2VN5B 1OHZB
chains in the Genus database with same CATH superfamily
4DH2B 2JNKA 5G5DB 2B59B 5LXVB 4UYQB 4IU3B 2CCLB 4FL4C 2Y3NB 3UL4B 1DAQA 4WI0B 1DAVA 4FL4A 2VN6B 2MTEA 4UYPB 2OZNB 4IU2B 5K39B 4U3SB 4WKZA 3KCPA 2VN5B 1OHZB
chains in the Genus database with same CATH topology
4DH2B 2JNKA 5G5DB 2B59B 5LXVB 4UYQB 4IU3B 2CCLB 4FL4C 2Y3NB 3UL4B 1DAQA 4WI0B 1DAVA 4FL4A 2VN6B 2MTEA 4UYPB 2OZNB 4IU2B 5K39B 4U3SB 4WKZA 3KCPA 2VN5B 1OHZB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4DH2 B;  2JNK A;  5G5D B;  2B59 B;  5LXV B;  4UYQ B;  4IU3 B;  2CCL B;  4FL4 C;  2Y3N B;  3UL4 B;  1DAQ A;  4WI0 B;  1DAV A;  4FL4 A;  2VN6 B;  2MTE A;  4UYP B;  2OZN B;  4IU2 B;  5K39 B;  4U3S B;  4WKZ A;  3KCP A;  2VN5 B;  1OHZ B; 
#chains in the Genus database with same CATH topology
 4DH2 B;  2JNK A;  5G5D B;  2B59 B;  5LXV B;  4UYQ B;  4IU3 B;  2CCL B;  4FL4 C;  2Y3N B;  3UL4 B;  1DAQ A;  4WI0 B;  1DAV A;  4FL4 A;  2VN6 B;  2MTE A;  4UYP B;  2OZN B;  4IU2 B;  5K39 B;  4U3S B;  4WKZ A;  3KCP A;  2VN5 B;  1OHZ B; 
#chains in the Genus database with same CATH homology
 4DH2 B;  2JNK A;  5G5D B;  2B59 B;  5LXV B;  4UYQ B;  4IU3 B;  2CCL B;  4FL4 C;  2Y3N B;  3UL4 B;  1DAQ A;  4WI0 B;  1DAV A;  4FL4 A;  2VN6 B;  2MTE A;  4UYP B;  2OZN B;  4IU2 B;  5K39 B;  4U3S B;  4WKZ A;  3KCP A;  2VN5 B;  1OHZ B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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