The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
188
|
sequence length |
597
|
structure length |
597
|
Chain Sequence |
NDKLIELSNSNENWVMPGKNYDSNNYSTSTQINVDNVKQLKHAWSFSTGELHGHEGAPLVIGDVMYVHSSFPNKTFALDLNDPGHILWQHSPKQDPAARSVACCDLVNRGLAYWPGDDKTPSLIIKTQLDGHLVALNAKTGEEFWKVENGDIKVGQTLTQAPYVVHDLAIVGSSGAELGVRGHVTAYNVRTGEQAWRYYATGPDAEIGLADDFNSANPHYGQKGLGTATWEGDAWKIGGGTNWGWYAYDPAANLIYYGSGNPAPWNETMRPGDNKWTMTITARDADTGKMKFGYQKTPHDEWDFAGVNVIMLSEQTDKTGKKRKLLTHPDRNGIVYTLDRENGDLISADKLDDTVNVFKTVDLKTGLPVRDPEYGTRMDHKGTDICPSAMGYHNQGHDSYDPQKQLFFMGINHICMDWEPFMLPYRAGQFFVGATLWMYPGPKGDRQNYLGLGQIKAYNAITNEYKWQHMERFSVWGGTLATAGNLVFYGTLDGFLKARNSDTGELVWKHKLPSGVIGYPMTYEHKGVQYIAVMSGVGGWPGVGLVFDLQDPTAGLGAVGAFKNLQNYTQMGGSLEVFSLDGKNPYDDVNVGEYEKG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structures of cytochrome c(L) and methanol dehydrogenase from Hyphomicrobium denitrificans: structural and mechanistic insights into interactions between the two proteins
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| molecule keywords |
methanol dehydrogenase large subunit
|
| total genus |
188
|
| structure length |
597
|
| sequence length |
597
|
| chains with identical sequence |
D, I
|
| ec nomenclature |
ec
1.1.99.8: Transferred entry: 1.1.2.7 and 1.1.2.8. |
| pdb deposition date | 2005-08-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01011 | PQQ | PQQ enzyme repeat |
| A | PF13360 | PQQ_2 | PQQ-like domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 8 Propeller | Methanol Dehydrogenase; Chain A | Quinoprotein alcohol dehydrogenase-like superfamily |
#chains in the Genus database with same CATH superfamily 4CVB A; 1H4I A; 1YIQ A; 2AD7 A; 2AD6 A; 1G72 A; 1FLG A; 1H4J A; 1W6S A; 2AD8 A; 4CVC A; 4MAE A; 4AAH A; 1KV9 A; 4TQO A; 4MH1 A; 1LRW A; 1KB0 A; 2D0V A; #chains in the Genus database with same CATH topology 1YIQ A; 3Q0T A; 3OPM A; 2AD7 A; 2BUC A; 3HAC A; 1QKS A; 2G5T A; 2OLE A; 2P8S A; 3BJM A; 4FFV A; 4KR0 A; 2AJL I; 2QTB A; 2OAE A; 3G0G A; 3H0C A; 1FLG A; 1RWQ A; 1H9Y A; 5LLS A; 4MAE A; 1KV9 A; 2HHA A; 4DSA A; 1HJ5 A; 1TK3 A; 2GBG A; 4QZV A; 2BUB A; 4MH1 A; 1Z68 A; 3EIO A; 3C43 A; 1DY7 A; 2D5L A; 1N1M A; 1N90 A; 2GBI A; 1KB0 A; 2AJD A; 1X70 A; 4CVB A; 1N15 A; 3G0B A; 1H4I A; 1TKR A; 3HAB A; 2QJR A; 2ECF A; 2OPH A; 5KBY A; 1H9X A; 2I78 A; 4PV7 A; 3C45 A; 2IIT A; 2ONC A; 1PFQ A; 3CCC A; 1AOM A; 3CCB A; 5ISM A; 2I03 A; 2AJC A; 1BL9 A; 1R9N A; 2OQV A; 4LKO A; 3VJK A; 5T4H A; 3QBJ A; 1R9M A; 3VJM A; 1N50 A; 3WQH A; 3OC0 A; 5T4B A; 1HZV A; 4A5S A; 4PNZ A; 1LRW A; 1HJ4 A; 2QKY A; 1NIR A; 4JH0 A; 1ORV A; 1XFD A; 2FJP A; 4N8D A; 4WJL A; 2BGN A; 2RGU A; 5T4E A; 3D4L A; 2AD6 A; 2OGZ A; 4G1F A; 3F8S A; 2EEP A; 2QOE A; 1WCY A; 3NOX A; 3W2T A; 1G72 A; 2OQI A; 2G63 A; 2OAG A; 3SX4 A; 1AOF A; 1AOQ A; 1H4J A; 1GQ1 A; 2Z3Z A; 2GBF A; 2I3Z A; 2AJB A; 1W6S A; 2IIV A; 2Z3W A; 4FFW A; 2AD8 A; 3Q8W A; 2DCM A; 4CVC A; 4AAH A; 1GJQ A; 2AJ8 A; 5I7U A; 2BUA A; 3G0C A; 4N8E A; 2RIP A; 5T4F A; 1HCM A; 2D0V A; 5J3J A; 3O95 A; 4J3J A; 1NNO A; 1W1I A; 3O9V A; 2G5P A; 2GBC A; 1E2R A; 1ORW A; 1NU6 A; 2JID A; 2QT9 A; 1NU8 A; 3KWJ A; 3SWW A; 4TQO A; 2BGR A; 3G0D A; 1U8E A; 3KWF A; 4DSZ A; 1HZU A; 1HJ3 A; 4Q1V A; 1J2E A; 3VJL A; 4L72 A; 4DTC A; #chains in the Genus database with same CATH homology 4CVB A; 1H4I A; 1YIQ A; 2AD7 A; 2AD6 A; 1G72 A; 1FLG A; 1H4J A; 1W6S A; 2AD8 A; 4CVC A; 4MAE A; 4AAH A; 1KV9 A; 4TQO A; 4MH1 A; 1LRW A; 1KB0 A; 2D0V A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
