The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
89
|
sequence length |
295
|
structure length |
295
|
Chain Sequence |
RAATAGVRISHPQRLIDPSIQASKLELAEFHARYADLLLRDLRERPVSLVRGPDGIGGELFFQKHAARLKIPGIVQLDPALDPGHPPLLQIRSAEALVGAVQMGSIEFHTWNASLANLERPDRFVLDLDPDPALPWKRMLEATQLSLTLLDELGLRAFLKTSGGKGMHLLVPLERRHGWDEVKDFAQAISQHLARLMPERFSAVSGPRNRVGKIFVDYLRNSRGASTVAAYSVRAREGLPVSVPVFREELDSLQGANQWNLRSLPQRLDELAGDDPWADYAGTRQRISAAMRRQL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Atomic structure and nonhomologous end-joining function of the polymerase component of bacterial DNA ligase D
pubmed doi rcsb |
| molecule keywords |
probable ATP-dependent DNA ligase
|
| molecule tags |
Hydrolase/transferase
|
| source organism |
Pseudomonas aeruginosa
|
| total genus |
89
|
| structure length |
295
|
| sequence length |
295
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
6.5.1.1: DNA ligase (ATP). |
| pdb deposition date | 2005-12-07 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | DNA primase, PRIM domain | DNA primase, PRIM domain |
#chains in the Genus database with same CATH superfamily 4LIM A; 4BPX A; 4RR2 A; 4LIL A; 4BPW A; 4LIK A; 1ZT2 A; 4MHQ A; 4BPU A; 2FAR A; 2FAO A; 2FAQ A; 4MM2 A; 5EXR A; #chains in the Genus database with same CATH topology 4LIM A; 1G71 A; 4BPX A; 4RR2 A; 2ATZ A; 4LIL A; 4BPW A; 4LIK A; 1ZT2 A; 4MHQ A; 2FAQ A; 4BPU A; 2FAR A; 2FAO A; 1V34 A; 1V33 A; 4MM2 A; 5EXR A; #chains in the Genus database with same CATH homology 4LIM A; 1G71 A; 4BPX A; 4RR2 A; 4LIL A; 4BPW A; 4LIK A; 1ZT2 A; 4MHQ A; 2FAQ A; 4BPU A; 2FAR A; 2FAO A; 1V34 A; 1V33 A; 4MM2 A; 5EXR A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
