The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
9
|
sequence length |
65
|
structure length |
65
|
Chain Sequence |
GSRVPSVAGLDVDAARQRLKDAGFQVADQTNSVNSSAKYGEVVGTSPSGQTIPGSIVTIQISNGI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and binding properties of the PASTA domain of PonA2, a key penicillin binding protein from Mycobacterium tuberculosis.
pubmed doi rcsb |
| molecule keywords |
Bifunctional membrane-associated penicillin-binding protein
|
| molecule tags |
Penicillin binding protein
|
| source organism |
Mycobacterium tuberculosis
|
| total genus |
9
|
| structure length |
65
|
| sequence length |
65
|
| ec nomenclature | |
| pdb deposition date | 2013-11-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03793 | PASTA | PASTA domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Trypsin Inhibitor V; Chain A | Trypsin Inhibitor V; Chain A |
#chains in the Genus database with same CATH superfamily 2KUE A; 2KUI A; 5E0Z A; 2KUD A; 2KUF A; 3M9G A; 5E10 A; 5E0Y A; 3PY9 A; 3OUV A; 2MGV A; #chains in the Genus database with same CATH topology 1Y3D I; 2SEC I; 3RDY A; 1TEC I; 1COA I; 4B1T B; 1YPB I; 3M9G A; 1Y34 I; 5FFN I; 1EGL A; 5E0Y A; 1TM1 I; 2CI2 I; 1TM5 I; 1Y1K I; 1YPA I; 2KUE A; 3RDZ C; 4B2C B; 5FBZ B; 2KUF A; 5E10 A; 3W0E A; 1ACB I; 3W0D A; 2TEC I; 1TO1 I; 1HYM A; 1Y3B I; 1Y3C I; 1Y48 I; 3CI2 A; 1SBN I; 1Y3F I; 2KUD A; 1Y4A I; 2SNI I; 1MEE I; 1LW6 I; 1TIN A; 1VBW A; 1YPC I; 4B2B B; 1CIS A; 3PY9 A; 3OUV A; 1TM4 I; 1SIB I; 2KUI A; 1TO2 I; 5E0Z A; 1DWM A; 1Y33 I; 4H4F B; 1TMG I; 1TM3 I; 1Y4D I; 1CSE I; 1TM7 I; 1MIT A; 3TEC I; 4B2A B; 2MGV A; #chains in the Genus database with same CATH homology 2KUE A; 2KUI A; 5E0Z A; 2KUD A; 2KUF A; 3M9G A; 5E10 A; 5E0Y A; 3PY9 A; 3OUV A; 2MGV A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
