2MTE | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	69
structure length	69
Chain Sequence	STKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDTLPYKN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 69 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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69 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Ruminiclostridium thermocellum
publication title	Revisiting the NMR solution structure of the Cel48S type-I dockerin module from Clostridium thermocellum reveals a cohesin-primed conformation. pubmed doi rcsb
molecule keywords	Cellulose 1,4-beta-cellobiosidase (reducing end) CelS
total genus	20
structure length	69
sequence length	69
ec nomenclature	ec 3.2.1.176: Cellulose 1,4-beta-cellobiosidase (reducing end).
pdb deposition date	2014-08-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00404	Dockerin_1	Dockerin type I domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1330.10	Mainly Alpha	Orthogonal Bundle	Type 1 dockerin domain	Dockerin domain	2mteA00

4FL4A 4WKZA 4IU3B 1DAVA 3UL4B 2VN5B 2CCLB 1OHZB 5K39B 2JNKA 4UYQB 2VN6B 4WI0B 2Y3NB 2B59B 1DAQA 5LXVB 2OZNB 4UYPB 2MTEA 3KCPA 5G5DB 4DH2B 4U3SB 4IU2B 4FL4C
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4FL4 A;  4WKZ A;  4IU3 B;  1DAV A;  3UL4 B;  2VN5 B;  2CCL B;  1OHZ B;  5K39 B;  2JNK A;  4UYQ B;  2VN6 B;  4WI0 B;  2Y3N B;  2B59 B;  1DAQ A;  5LXV B;  2OZN B;  4UYP B;  2MTE A;  3KCP A;  5G5D B;  4DH2 B;  4U3S B;  4IU2 B;  4FL4 C; 
#chains in the Genus database with same CATH topology
 4FL4 A;  4WKZ A;  4IU3 B;  1DAV A;  3UL4 B;  2VN5 B;  2CCL B;  1OHZ B;  5K39 B;  2JNK A;  4UYQ B;  2VN6 B;  4WI0 B;  2Y3N B;  2B59 B;  1DAQ A;  5LXV B;  2OZN B;  4UYP B;  2MTE A;  3KCP A;  5G5D B;  4DH2 B;  4U3S B;  4IU2 B;  4FL4 C; 
#chains in the Genus database with same CATH homology
 4FL4 A;  4WKZ A;  4IU3 B;  1DAV A;  3UL4 B;  2VN5 B;  2CCL B;  1OHZ B;  5K39 B;  2JNK A;  4UYQ B;  2VN6 B;  4WI0 B;  2Y3N B;  2B59 B;  1DAQ A;  5LXV B;  2OZN B;  4UYP B;  2MTE A;  3KCP A;  5G5D B;  4DH2 B;  4U3S B;  4IU2 B;  4FL4 C;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2MTEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations