2OGKA

Crystal structure of protein af2318 from archaeglobus fulgidus, pfam duf54
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
141
structure length
133
Chain Sequence
GKIEWVRVSAVVHSTEDREKVGEAISTLFPFEFEIAVSKMEYLEVELTKSSEIKKFWKNLLELLGEQAEEILSTLEDRIDEQNVLHIRIDKQKAYLGEVSLTSGGDPIAVKLRLVTYPSKREKVIEFARELCT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Archaeoglobus fulgidus
molecule keywords Hypothetical protein
total genus 37
structure length 133
sequence length 141
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01877 RNA_binding RNA binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 2ogkA00
1VQ7D 1KQSD 1K9MF 1YJ9D 1VQ4D 1Q86F 3CCED 1MJIA 1VQMD 3C9GA 1YJND 4UY8F 1KD1F 4IO9D 1VQLD 1S72D 1Q7YF 1VQ6D 5GADF 4IOCD 3CPWD 3CCVD 3CCLD 3CMAD 1VQND 5GAHF 5DM7D 5JVHD 2OTJD 3CC4D 5H1SH 4U67D 1VQ8D 3PIPD 3G4SD 2QA4D 3PIOD 1YJWD 2WNYA 1M1KF 1VQ5D 1NJIF 2QEXD 5MLCG 4WFND 3CC2D 3CCRD 1M90F 1Q82F 1YI2D 2NWUA 3G71D 1IQ4A 3DLLD 4IOAD 5HL7D 1YHQD 3I56D 1W2BD 3J7ZF 1QVGD 3CXCD 2OGKA 2ZJPD 4WFAD 1K8AF 3CCQD 1VQOD 3OW2D 3CCMD 2ZJRD 2PZZA 1VQPD 1YITD 3I55D 3CCJD 3CC7D 4WF9D 3CF5D 3CMED 4WFBD 5GAEF 1QVFD 2ZJQD 1Q81F 5GAGF 2NRQA 1JJ2D 1YIJD 3D7AA 1VQKD 3G6ED 3CD6D 3CCUD 3CCSD 5JVGD 1N8RF 1VQ9D 4WCED 2OTLD 1K73F 5DM6D 1KC8F
chains in the Genus database with same CATH superfamily
1VQ7D 1KQSD 1K9MF 1YJ9D 1VQ4D 1Q86F 3CCED 1MJIA 1VQMD 3C9GA 1YJND 4UY8F 1KD1F 4IO9D 1VQLD 1S72D 1Q7YF 1VQ6D 5GADF 4IOCD 3CPWD 3CCVD 3CCLD 3CMAD 1VQND 5GAHF 5DM7D 5JVHD 2OTJD 3CC4D 5H1SH 4U67D 1VQ8D 3PIPD 3G4SD 2QA4D 3PIOD 1YJWD 2WNYA 1M1KF 1VQ5D 1NJIF 2QEXD 5MLCG 4WFND 3CC2D 3CCRD 1M90F 1Q82F 1YI2D 2NWUA 3G71D 1IQ4A 3DLLD 4IOAD 5HL7D 1YHQD 3I56D 1W2BD 3J7ZF 1QVGD 3CXCD 2OGKA 2ZJPD 4WFAD 1K8AF 3CCQD 1VQOD 3OW2D 3CCMD 2ZJRD 2PZZA 1VQPD 1YITD 3I55D 3CCJD 3CC7D 4WF9D 3CF5D 3CMED 4WFBD 5GAEF 1QVFD 2ZJQD 1Q81F 5GAGF 2NRQA 1JJ2D 1YIJD 3D7AA 1VQKD 3G6ED 3CD6D 3CCUD 3CCSD 5JVGD 1N8RF 1VQ9D 4WCED 2OTLD 1K73F 5DM6D 1KC8F
chains in the Genus database with same CATH topology
1VQ7D 1KQSD 1K9MF 1YJ9D 1VQ4D 1Q86F 3CCED 1MJIA 1VQMD 3C9GA 1YJND 4UY8F 1KD1F 4IO9D 1VQLD 1S72D 1Q7YF 1VQ6D 5GADF 4IOCD 3CPWD 3CCVD 3CCLD 3CMAD 1VQND 5GAHF 5DM7D 5JVHD 2OTJD 3CC4D 5H1SH 4U67D 1VQ8D 3PIPD 3G4SD 2QA4D 3PIOD 1YJWD 2WNYA 1M1KF 1VQ5D 1NJIF 2QEXD 5MLCG 4WFND 3CC2D 3CCRD 1M90F 1Q82F 1YI2D 2NWUA 3G71D 1IQ4A 3DLLD 4IOAD 5HL7D 1YHQD 3I56D 1W2BD 3J7ZF 1QVGD 3CXCD 2OGKA 2ZJPD 4WFAD 1K8AF 3CCQD 1VQOD 3OW2D 3CCMD 2ZJRD 2PZZA 1VQPD 1YITD 3I55D 3CCJD 3CC7D 4WF9D 3CF5D 3CMED 4WFBD 5GAEF 1QVFD 2ZJQD 1Q81F 5GAGF 2NRQA 1JJ2D 1YIJD 3D7AA 1VQKD 3G6ED 3CD6D 3CCUD 3CCSD 5JVGD 1N8RF 1VQ9D 4WCED 2OTLD 1K73F 5DM6D 1KC8F
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1VQ7 D;  1KQS D;  1K9M F;  1YJ9 D;  1VQ4 D;  1Q86 F;  3CCE D;  1MJI A;  1VQM D;  3C9G A;  1YJN D;  4UY8 F;  1KD1 F;  4IO9 D;  1VQL D;  1S72 D;  1Q7Y F;  1VQ6 D;  5GAD F;  4IOC D;  3CPW D;  3CCV D;  3CCL D;  3CMA D;  1VQN D;  5GAH F;  5DM7 D;  5JVH D;  2OTJ D;  3CC4 D;  5H1S H;  4U67 D;  1VQ8 D;  3PIP D;  3G4S D;  2QA4 D;  3PIO D;  1YJW D;  2WNY A;  1M1K F;  1VQ5 D;  1NJI F;  2QEX D;  5MLC G;  4WFN D;  3CC2 D;  3CCR D;  1M90 F;  1Q82 F;  1YI2 D;  2NWU A;  3G71 D;  1IQ4 A;  3DLL D;  4IOA D;  5HL7 D;  1YHQ D;  3I56 D;  1W2B D;  3J7Z F;  1QVG D;  3CXC D;  2OGK A;  2ZJP D;  4WFA D;  1K8A F;  3CCQ D;  1VQO D;  3OW2 D;  3CCM D;  2ZJR D;  2PZZ A;  1VQP D;  1YIT D;  3I55 D;  3CCJ D;  3CC7 D;  4WF9 D;  3CF5 D;  3CME D;  4WFB D;  5GAE F;  1QVF D;  2ZJQ D;  1Q81 F;  5GAG F;  2NRQ A;  1JJ2 D;  1YIJ D;  3D7A A;  1VQK D;  3G6E D;  3CD6 D;  3CCU D;  3CCS D;  5JVG D;  1N8R F;  1VQ9 D;  4WCE D;  2OTL D;  1K73 F;  5DM6 D;  1KC8 F; 
#chains in the Genus database with same CATH topology
 1VQ7 D;  1KQS D;  1K9M F;  1YJ9 D;  1VQ4 D;  1Q86 F;  3CCE D;  1MJI A;  1VQM D;  3C9G A;  1YJN D;  4UY8 F;  1KD1 F;  4IO9 D;  1VQL D;  1S72 D;  1Q7Y F;  1VQ6 D;  5GAD F;  4IOC D;  3CPW D;  3CCV D;  3CCL D;  3CMA D;  1VQN D;  5GAH F;  5DM7 D;  5JVH D;  2OTJ D;  3CC4 D;  5H1S H;  4U67 D;  1VQ8 D;  3PIP D;  3G4S D;  2QA4 D;  3PIO D;  1YJW D;  2WNY A;  1M1K F;  1VQ5 D;  1NJI F;  2QEX D;  5MLC G;  4WFN D;  3CC2 D;  3CCR D;  1M90 F;  1Q82 F;  1YI2 D;  2NWU A;  3G71 D;  1IQ4 A;  3DLL D;  4IOA D;  5HL7 D;  1YHQ D;  3I56 D;  1W2B D;  3J7Z F;  1QVG D;  3CXC D;  2OGK A;  2ZJP D;  4WFA D;  1K8A F;  3CCQ D;  1VQO D;  3OW2 D;  3CCM D;  2ZJR D;  2PZZ A;  1VQP D;  1YIT D;  3I55 D;  3CCJ D;  3CC7 D;  4WF9 D;  3CF5 D;  3CME D;  4WFB D;  5GAE F;  1QVF D;  2ZJQ D;  1Q81 F;  5GAG F;  2NRQ A;  1JJ2 D;  1YIJ D;  3D7A A;  1VQK D;  3G6E D;  3CD6 D;  3CCU D;  3CCS D;  5JVG D;  1N8R F;  1VQ9 D;  4WCE D;  2OTL D;  1K73 F;  5DM6 D;  1KC8 F; 
#chains in the Genus database with same CATH homology
 1VQ7 D;  1KQS D;  1K9M F;  1YJ9 D;  1VQ4 D;  1Q86 F;  3CCE D;  1MJI A;  1VQM D;  3C9G A;  1YJN D;  4UY8 F;  1KD1 F;  4IO9 D;  1VQL D;  1S72 D;  1Q7Y F;  1VQ6 D;  5GAD F;  4IOC D;  3CPW D;  3CCV D;  3CCL D;  3CMA D;  1VQN D;  5GAH F;  5DM7 D;  5JVH D;  2OTJ D;  3CC4 D;  5H1S H;  4U67 D;  1VQ8 D;  3PIP D;  3G4S D;  2QA4 D;  3PIO D;  1YJW D;  2WNY A;  1M1K F;  1VQ5 D;  1NJI F;  2QEX D;  5MLC G;  4WFN D;  3CC2 D;  3CCR D;  1M90 F;  1Q82 F;  1YI2 D;  2NWU A;  3G71 D;  1IQ4 A;  3DLL D;  4IOA D;  5HL7 D;  1YHQ D;  3I56 D;  1W2B D;  3J7Z F;  1QVG D;  3CXC D;  2OGK A;  2ZJP D;  4WFA D;  1K8A F;  3CCQ D;  1VQO D;  3OW2 D;  3CCM D;  2ZJR D;  2PZZ A;  1VQP D;  1YIT D;  3I55 D;  3CCJ D;  3CC7 D;  4WF9 D;  3CF5 D;  3CME D;  4WFB D;  5GAE F;  1QVF D;  2ZJQ D;  1Q81 F;  5GAG F;  2NRQ A;  1JJ2 D;  1YIJ D;  3D7A A;  1VQK D;  3G6E D;  3CD6 D;  3CCU D;  3CCS D;  5JVG D;  1N8R F;  1VQ9 D;  4WCE D;  2OTL D;  1K73 F;  5DM6 D;  1KC8 F;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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