2PZZA

2.2 a resolution crystal structure of upf0201 protein from methanococcus jannaschii
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
133
structure length
133
Chain Sequence
LEVIIKAKVKPTEDKYKVKKAILNIFPKAKLTFIEKDNEFGEWEGKTKSVEKLKELLRSQSILDAARMVLEKGMTENATKFYLNKQAAYVGAVNFDIDTHGGIFVKILADENEDIMKIIKDIAPRTKGGVIIN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function.
pubmed doi rcsb
molecule keywords UPF0201 protein MJ1564
molecule tags Structural genomics, unknown function
source organism Methanocaldococcus jannaschii dsm 2661
total genus 34
structure length 133
sequence length 133
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-05-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01877 RNA_binding RNA binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5; Chain: A, 50s Ribosomal Protein L5; Chain: A, 2pzzA01
1VQ7D 3G6ED 1IQ4A 4U67D 4WFBD 1VQND 1QVFD 3CMED 1NJIF 3I56D 2WNYA 2QEXD 1M1KF 5JVGD 3CCUD 1VQMD 4WFND 3CC2D 2OGKA 4WF9D 3CMAD 3I55D 1VQ9D 2OTJD 1W2BD 3CC7D 4IOAD 2PZZA 3OW2D 1YITD 1KD1F 1K73F 5H1SH 5MLCG 3PIPD 2NWUA 1YI2D 1VQPD 3CCRD 5JVHD 1VQ8D 4UY8F 1K9MF 3PIOD 4IOCD 4WFAD 2ZJQD 5GAEF 3CPWD 1VQ6D 2NRQA 3CCED 5DM6D 3CC4D 1KQSD 2QA4D 1Q86F 1JJ2D 3C9GA 1VQOD 3CCJD 3CCSD 5GAGF 3CCVD 1KC8F 1YHQD 5GADF 3CCQD 4WCED 1VQLD 3CCLD 1YJ9D 1VQKD 5HL7D 3G4SD 1YJND 5GAHF 1N8RF 3CF5D 1Q82F 4IO9D 1Q7YF 1YIJD 3CXCD 2OTLD 1S72D 3J7ZF 5DM7D 1QVGD 3D7AA 1YJWD 2ZJPD 1VQ4D 1Q81F 3CCMD 1K8AF 3G71D 1MJIA 3DLLD 2ZJRD 1M90F 1VQ5D 3CD6D
chains in the Genus database with same CATH superfamily
1VQ7D 3G6ED 1IQ4A 4U67D 4WFBD 1VQND 1QVFD 3CMED 1NJIF 3I56D 2WNYA 2QEXD 1M1KF 5JVGD 3CCUD 1VQMD 4WFND 3CC2D 2OGKA 4WF9D 3CMAD 3I55D 1VQ9D 2OTJD 1W2BD 3CC7D 4IOAD 2PZZA 3OW2D 1YITD 1KD1F 1K73F 5H1SH 5MLCG 3PIPD 2NWUA 1YI2D 1VQPD 3CCRD 5JVHD 1VQ8D 4UY8F 1K9MF 3PIOD 4IOCD 4WFAD 2ZJQD 5GAEF 3CPWD 1VQ6D 2NRQA 3CCED 5DM6D 3CC4D 1KQSD 2QA4D 1Q86F 1JJ2D 3C9GA 1VQOD 3CCJD 3CCSD 5GAGF 3CCVD 1KC8F 1YHQD 5GADF 3CCQD 4WCED 1VQLD 3CCLD 1YJ9D 1VQKD 5HL7D 3G4SD 1YJND 5GAHF 1N8RF 3CF5D 1Q82F 4IO9D 1Q7YF 1YIJD 3CXCD 2OTLD 1S72D 3J7ZF 5DM7D 1QVGD 3D7AA 1YJWD 2ZJPD 1VQ4D 1Q81F 3CCMD 1K8AF 3G71D 1MJIA 3DLLD 2ZJRD 1M90F 1VQ5D 3CD6D
chains in the Genus database with same CATH topology
1VQ7D 3G6ED 1IQ4A 4U67D 4WFBD 1VQND 1QVFD 3CMED 1NJIF 3I56D 2WNYA 2QEXD 1M1KF 5JVGD 3CCUD 1VQMD 4WFND 3CC2D 2OGKA 4WF9D 3CMAD 3I55D 1VQ9D 2OTJD 1W2BD 3CC7D 4IOAD 2PZZA 3OW2D 1YITD 1KD1F 1K73F 5H1SH 5MLCG 3PIPD 2NWUA 1YI2D 1VQPD 3CCRD 5JVHD 1VQ8D 4UY8F 1K9MF 3PIOD 4IOCD 4WFAD 2ZJQD 5GAEF 3CPWD 1VQ6D 2NRQA 3CCED 5DM6D 3CC4D 1KQSD 2QA4D 1Q86F 1JJ2D 3C9GA 1VQOD 3CCJD 3CCSD 5GAGF 3CCVD 1KC8F 1YHQD 5GADF 3CCQD 4WCED 1VQLD 3CCLD 1YJ9D 1VQKD 5HL7D 3G4SD 1YJND 5GAHF 1N8RF 3CF5D 1Q82F 4IO9D 1Q7YF 1YIJD 3CXCD 2OTLD 1S72D 3J7ZF 5DM7D 1QVGD 3D7AA 1YJWD 2ZJPD 1VQ4D 1Q81F 3CCMD 1K8AF 3G71D 1MJIA 3DLLD 2ZJRD 1M90F 1VQ5D 3CD6D
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1VQ7 D;  3G6E D;  1IQ4 A;  4U67 D;  4WFB D;  1VQN D;  1QVF D;  3CME D;  1NJI F;  3I56 D;  2WNY A;  2QEX D;  1M1K F;  5JVG D;  3CCU D;  1VQM D;  4WFN D;  3CC2 D;  2OGK A;  4WF9 D;  3CMA D;  3I55 D;  1VQ9 D;  2OTJ D;  1W2B D;  3CC7 D;  4IOA D;  2PZZ A;  3OW2 D;  1YIT D;  1KD1 F;  1K73 F;  5H1S H;  5MLC G;  3PIP D;  2NWU A;  1YI2 D;  1VQP D;  3CCR D;  5JVH D;  1VQ8 D;  4UY8 F;  1K9M F;  3PIO D;  4IOC D;  4WFA D;  2ZJQ D;  5GAE F;  3CPW D;  1VQ6 D;  2NRQ A;  3CCE D;  5DM6 D;  3CC4 D;  1KQS D;  2QA4 D;  1Q86 F;  1JJ2 D;  3C9G A;  1VQO D;  3CCJ D;  3CCS D;  5GAG F;  3CCV D;  1KC8 F;  1YHQ D;  5GAD F;  3CCQ D;  4WCE D;  1VQL D;  3CCL D;  1YJ9 D;  1VQK D;  5HL7 D;  3G4S D;  1YJN D;  5GAH F;  1N8R F;  3CF5 D;  1Q82 F;  4IO9 D;  1Q7Y F;  1YIJ D;  3CXC D;  2OTL D;  1S72 D;  3J7Z F;  5DM7 D;  1QVG D;  3D7A A;  1YJW D;  2ZJP D;  1VQ4 D;  1Q81 F;  3CCM D;  1K8A F;  3G71 D;  1MJI A;  3DLL D;  2ZJR D;  1M90 F;  1VQ5 D;  3CD6 D; 
#chains in the Genus database with same CATH topology
 1VQ7 D;  3G6E D;  1IQ4 A;  4U67 D;  4WFB D;  1VQN D;  1QVF D;  3CME D;  1NJI F;  3I56 D;  2WNY A;  2QEX D;  1M1K F;  5JVG D;  3CCU D;  1VQM D;  4WFN D;  3CC2 D;  2OGK A;  4WF9 D;  3CMA D;  3I55 D;  1VQ9 D;  2OTJ D;  1W2B D;  3CC7 D;  4IOA D;  2PZZ A;  3OW2 D;  1YIT D;  1KD1 F;  1K73 F;  5H1S H;  5MLC G;  3PIP D;  2NWU A;  1YI2 D;  1VQP D;  3CCR D;  5JVH D;  1VQ8 D;  4UY8 F;  1K9M F;  3PIO D;  4IOC D;  4WFA D;  2ZJQ D;  5GAE F;  3CPW D;  1VQ6 D;  2NRQ A;  3CCE D;  5DM6 D;  3CC4 D;  1KQS D;  2QA4 D;  1Q86 F;  1JJ2 D;  3C9G A;  1VQO D;  3CCJ D;  3CCS D;  5GAG F;  3CCV D;  1KC8 F;  1YHQ D;  5GAD F;  3CCQ D;  4WCE D;  1VQL D;  3CCL D;  1YJ9 D;  1VQK D;  5HL7 D;  3G4S D;  1YJN D;  5GAH F;  1N8R F;  3CF5 D;  1Q82 F;  4IO9 D;  1Q7Y F;  1YIJ D;  3CXC D;  2OTL D;  1S72 D;  3J7Z F;  5DM7 D;  1QVG D;  3D7A A;  1YJW D;  2ZJP D;  1VQ4 D;  1Q81 F;  3CCM D;  1K8A F;  3G71 D;  1MJI A;  3DLL D;  2ZJR D;  1M90 F;  1VQ5 D;  3CD6 D; 
#chains in the Genus database with same CATH homology
 1VQ7 D;  3G6E D;  1IQ4 A;  4U67 D;  4WFB D;  1VQN D;  1QVF D;  3CME D;  1NJI F;  3I56 D;  2WNY A;  2QEX D;  1M1K F;  5JVG D;  3CCU D;  1VQM D;  4WFN D;  3CC2 D;  2OGK A;  4WF9 D;  3CMA D;  3I55 D;  1VQ9 D;  2OTJ D;  1W2B D;  3CC7 D;  4IOA D;  2PZZ A;  3OW2 D;  1YIT D;  1KD1 F;  1K73 F;  5H1S H;  5MLC G;  3PIP D;  2NWU A;  1YI2 D;  1VQP D;  3CCR D;  5JVH D;  1VQ8 D;  4UY8 F;  1K9M F;  3PIO D;  4IOC D;  4WFA D;  2ZJQ D;  5GAE F;  3CPW D;  1VQ6 D;  2NRQ A;  3CCE D;  5DM6 D;  3CC4 D;  1KQS D;  2QA4 D;  1Q86 F;  1JJ2 D;  3C9G A;  1VQO D;  3CCJ D;  3CCS D;  5GAG F;  3CCV D;  1KC8 F;  1YHQ D;  5GAD F;  3CCQ D;  4WCE D;  1VQL D;  3CCL D;  1YJ9 D;  1VQK D;  5HL7 D;  3G4S D;  1YJN D;  5GAH F;  1N8R F;  3CF5 D;  1Q82 F;  4IO9 D;  1Q7Y F;  1YIJ D;  3CXC D;  2OTL D;  1S72 D;  3J7Z F;  5DM7 D;  1QVG D;  3D7A A;  1YJW D;  2ZJP D;  1VQ4 D;  1Q81 F;  3CCM D;  1K8A F;  3G71 D;  1MJI A;  3DLL D;  2ZJR D;  1M90 F;  1VQ5 D;  3CD6 D;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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