2VT8A

Structure of a conserved dimerisation domain within fbox7 and pi31
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
144
structure length
141
Chain Sequence
SHMAGLEVLFASAAPAITRQDALVCFLHWEVVTHGYGLGVGDQPGPNDKKSELLPAGWNNNKDLYVLRYEYKDGRKLLVKAITVESSMILNVLEYGSQQVADLTLNLDDYIDAEHLGDFHRTYKNSEELRSRIVSGIITPI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of a Conserved Dimerization Domain within the F-Box Protein Fbxo7 and the Pi31 Proteasome Inhibitor.
pubmed doi rcsb
molecule tags Hydrolase inhibitor
source organism Homo sapiens
molecule keywords PROTEASOME INHIBITOR PI31 SUBUNIT
total genus 38
structure length 141
sequence length 144
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11566 PI31_Prot_N PI31 proteasome regulator N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.30 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Protein Transport Mog1p; Chain A 2vt8A00
4L9HA 4OUHA 4L9CA 2VT8A
chains in the Genus database with same CATH superfamily
4M5FB 1VR8A 3V7BA 4BQ8C 1TU1A 3LYDA 4RTIA 1JHSA 2VT8A 4LUQC 4BQ6D 3JCUP 2LNJA 4N88B 4N7SB 1V2BA 4ESQA 4L9CA 2VU4A 4OUHA 3WA5B 3HLZA 1EQ6A 4UI2D 3BCYA 4L9HA 2XB3A 4RTHA 4N80B 3NR5A
chains in the Genus database with same CATH topology
3WA5B 4M5FB 4LUQC 4ESQA 3BCYA 4L9CA 4N7SB 4L9HA 4OUHA 4N88B 4N80B 2VT8A 3NR5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L9H A;  4OUH A;  4L9C A;  2VT8 A; 
#chains in the Genus database with same CATH topology
 4M5F B;  1VR8 A;  3V7B A;  4BQ8 C;  1TU1 A;  3LYD A;  4RTI A;  1JHS A;  2VT8 A;  4LUQ C;  4BQ6 D;  3JCU P;  2LNJ A;  4N88 B;  4N7S B;  1V2B A;  4ESQ A;  4L9C A;  2VU4 A;  4OUH A;  3WA5 B;  3HLZ A;  1EQ6 A;  4UI2 D;  3BCY A;  4L9H A;  2XB3 A;  4RTH A;  4N80 B;  3NR5 A; 
#chains in the Genus database with same CATH homology
 3WA5 B;  4M5F B;  4LUQ C;  4ESQ A;  3BCY A;  4L9C A;  4N7S B;  4L9H A;  4OUH A;  4N88 B;  4N80 B;  2VT8 A;  3NR5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...