2VU4A

Structure of psbp protein from spinacia oleracea at 1.98 a resolution
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
171
structure length
148
Chain Sequence
TEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGVASANVLESSTPVVDGKQYYSITVLTREGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Raman Spectroscopy Adds Complementary Detail to the High-Resolution X-Ray Crystal Structure of Photosynthetic Psbp from Spinacia Oleracea.
pubmed doi rcsb
molecule tags Photosynthesis
source organism Spinacia oleracea
molecule keywords OXYGEN-EVOLVING ENHANCER PROTEIN 2
total genus 39
structure length 148
sequence length 171
ec nomenclature
pdb deposition date 2008-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01789 PsbP PsbP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 2vu4A00
3HLZA 4RTHA 1TU1A 3LYDA 4RTIA 4UI2D 2XB3A 4BQ6D 2LNJA 1JHSA 4BQ8C 3V7BA 3JCUP 1EQ6A 2VU4A 1V2BA
chains in the Genus database with same CATH superfamily
4L9CA 1VR8A 2VT8A 4N7SB 3WA5B 4M5FB 3JCUP 3HLZA 4RTHA 4L9HA 4ESQA 4BQ6D 4N88B 3NR5A 1V2BA 4LUQC 4UI2D 2XB3A 1JHSA 3BCYA 1TU1A 3LYDA 4RTIA 4N80B 4OUHA 2LNJA 4BQ8C 3V7BA 1EQ6A 2VU4A
chains in the Genus database with same CATH topology
3HLZA 4RTHA 1TU1A 3LYDA 4RTIA 4UI2D 2XB3A 4BQ6D 2LNJA 1JHSA 4BQ8C 3V7BA 3JCUP 1EQ6A 2VU4A 1V2BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HLZ A;  4RTH A;  1TU1 A;  3LYD A;  4RTI A;  4UI2 D;  2XB3 A;  4BQ6 D;  2LNJ A;  1JHS A;  4BQ8 C;  3V7B A;  3JCU P;  1EQ6 A;  2VU4 A;  1V2B A; 
#chains in the Genus database with same CATH topology
 4L9C A;  1VR8 A;  2VT8 A;  4N7S B;  3WA5 B;  4M5F B;  3JCU P;  3HLZ A;  4RTH A;  4L9H A;  4ESQ A;  4BQ6 D;  4N88 B;  3NR5 A;  1V2B A;  4LUQ C;  4UI2 D;  2XB3 A;  1JHS A;  3BCY A;  1TU1 A;  3LYD A;  4RTI A;  4N80 B;  4OUH A;  2LNJ A;  4BQ8 C;  3V7B A;  1EQ6 A;  2VU4 A; 
#chains in the Genus database with same CATH homology
 3HLZ A;  4RTH A;  1TU1 A;  3LYD A;  4RTI A;  4UI2 D;  2XB3 A;  4BQ6 D;  2LNJ A;  1JHS A;  4BQ8 C;  3V7B A;  3JCU P;  1EQ6 A;  2VU4 A;  1V2B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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