2XB3A

The structure of cyanobacterial psbp
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
160
structure length
155
Chain Sequence
SGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTLPAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTVY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structure of Cyanop at 2.8A: Implications for the Evolution and Function of the Psbp Subunit of Photosystem II.
pubmed doi rcsb
molecule tags Photosynthesis
source organism Thermosynechococcus elongatus
molecule keywords PSBP PROTEIN
total genus 37
structure length 155
sequence length 160
ec nomenclature
pdb deposition date 2010-04-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01789 PsbP PsbP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 2xb3A00
2XB3A 2VU4A 4UI2D 3V7BA 1EQ6A 1JHSA 4RTIA 3HLZA 3JCUP 4RTHA 1V2BA 3LYDA 4BQ6D 2LNJA 4BQ8C 1TU1A
chains in the Genus database with same CATH superfamily
4BQ6D 2VU4A 4RTIA 4RTHA 4BQ8C 4ESQA 1VR8A 2XB3A 2VT8A 3V7BA 3JCUP 1V2BA 3WA5B 4M5FB 4L9CA 4UI2D 3HLZA 3LYDA 2LNJA 1EQ6A 4LUQC 1TU1A 4N80B 3BCYA 4OUHA 1JHSA 3NR5A 4N88B 4L9HA 4N7SB
chains in the Genus database with same CATH topology
2XB3A 2VU4A 4UI2D 3V7BA 1EQ6A 1JHSA 4RTIA 3HLZA 3JCUP 4RTHA 1V2BA 3LYDA 4BQ6D 2LNJA 4BQ8C 1TU1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XB3 A;  2VU4 A;  4UI2 D;  3V7B A;  1EQ6 A;  1JHS A;  4RTI A;  3HLZ A;  3JCU P;  4RTH A;  1V2B A;  3LYD A;  4BQ6 D;  2LNJ A;  4BQ8 C;  1TU1 A; 
#chains in the Genus database with same CATH topology
 4BQ6 D;  2VU4 A;  4RTI A;  4RTH A;  4BQ8 C;  4ESQ A;  1VR8 A;  2XB3 A;  2VT8 A;  3V7B A;  3JCU P;  1V2B A;  3WA5 B;  4M5F B;  4L9C A;  4UI2 D;  3HLZ A;  3LYD A;  2LNJ A;  1EQ6 A;  4LUQ C;  1TU1 A;  4N80 B;  3BCY A;  4OUH A;  1JHS A;  3NR5 A;  4N88 B;  4L9H A;  4N7S B; 
#chains in the Genus database with same CATH homology
 2XB3 A;  2VU4 A;  4UI2 D;  3V7B A;  1EQ6 A;  1JHS A;  4RTI A;  3HLZ A;  3JCU P;  4RTH A;  1V2B A;  3LYD A;  4BQ6 D;  2LNJ A;  4BQ8 C;  1TU1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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