2Y3N | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	66
structure length	60
Chain Sequence	MFVKLKGDLNGDGVINMADVMILAQSFGKAIEKADLNNDGVINSDDAIILAQYFGKTKSA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structrual protein/hydrolase
source organism	Bacteroides cellulosolvens
publication title	Type II Cohesin-Dockerin Domain from Bacteroides Cellolosolvens rcsb
molecule keywords	CELLULOSOMAL SCAFFOLDIN
total genus	16
structure length	60
sequence length	66
chains with identical sequence	D
ec nomenclature
pdb deposition date	2010-12-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00404	Dockerin_1	Dockerin type I domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1330.10	Mainly Alpha	Orthogonal Bundle	Type 1 dockerin domain	Dockerin domain	2y3nB00

2CCLB 4WI0B 3KCPA 4WKZA 4UYPB 4IU2B 2B59B 1DAVA 4IU3B 1OHZB 4UYQB 2VN5B 4U3SB 2Y3NB 2JNKA 5LXVB 2OZNB 1DAQA 5K39B 2MTEA 2VN6B 4FL4C 4DH2B 3UL4B 5G5DB 4FL4A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2CCL B;  4WI0 B;  3KCP A;  4WKZ A;  4UYP B;  4IU2 B;  2B59 B;  1DAV A;  4IU3 B;  1OHZ B;  4UYQ B;  2VN5 B;  4U3S B;  2Y3N B;  2JNK A;  5LXV B;  2OZN B;  1DAQ A;  5K39 B;  2MTE A;  2VN6 B;  4FL4 C;  4DH2 B;  3UL4 B;  5G5D B;  4FL4 A; 
#chains in the Genus database with same CATH topology
 2CCL B;  4WI0 B;  3KCP A;  4WKZ A;  4UYP B;  4IU2 B;  2B59 B;  1DAV A;  4IU3 B;  1OHZ B;  4UYQ B;  2VN5 B;  4U3S B;  2Y3N B;  2JNK A;  5LXV B;  2OZN B;  1DAQ A;  5K39 B;  2MTE A;  2VN6 B;  4FL4 C;  4DH2 B;  3UL4 B;  5G5D B;  4FL4 A; 
#chains in the Genus database with same CATH homology
 2CCL B;  4WI0 B;  3KCP A;  4WKZ A;  4UYP B;  4IU2 B;  2B59 B;  1DAV A;  4IU3 B;  1OHZ B;  4UYQ B;  2VN5 B;  4U3S B;  2Y3N B;  2JNK A;  5LXV B;  2OZN B;  1DAQ A;  5K39 B;  2MTE A;  2VN6 B;  4FL4 C;  4DH2 B;  3UL4 B;  5G5D B;  4FL4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2Y3NB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations