3LYDA

Crystal structure of putative uncharacterized protein from jonesia denitrificans
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
158
structure length
158
Chain Sequence
MPSIRYPSTEFPALTGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAATGALHNQRTELDQRATQLPDYAERGRTETTVDGFPAYHIEYAYRHHGTITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDTFRLMHADLTVQPHG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Putative uncharacterized protein from Jonesia denitrificans
rcsb
molecule tags Structural genomics, unknown function
source organism Jonesia denitrificans
molecule keywords Uncharacterized protein
total genus 37
structure length 158
sequence length 158
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10738 Lpp-LpqN Probable lipoprotein LpqN
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 3lydA01
3JCUP 3LYDA 2LNJA 4RTIA 3V7BA 1V2BA 1TU1A 4RTHA 4UI2D 4BQ8C 1JHSA 3HLZA 4BQ6D 2XB3A 2VU4A 1EQ6A
chains in the Genus database with same CATH superfamily
4RTIA 3LYDA 2VT8A 3V7BA 3WA5B 4N80B 2VU4A 1VR8A 4N7SB 3BCYA 4BQ6D 3HLZA 3NR5A 2XB3A 1EQ6A 1V2BA 4M5FB 4UI2D 3JCUP 2LNJA 4N88B 1TU1A 4ESQA 4RTHA 4BQ8C 4L9HA 1JHSA 4L9CA 4LUQC 4OUHA
chains in the Genus database with same CATH topology
3JCUP 3LYDA 2LNJA 4RTIA 3V7BA 1V2BA 1TU1A 4RTHA 4UI2D 4BQ8C 1JHSA 3HLZA 4BQ6D 2XB3A 2VU4A 1EQ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JCU P;  3LYD A;  2LNJ A;  4RTI A;  3V7B A;  1V2B A;  1TU1 A;  4RTH A;  4UI2 D;  4BQ8 C;  1JHS A;  3HLZ A;  4BQ6 D;  2XB3 A;  2VU4 A;  1EQ6 A; 
#chains in the Genus database with same CATH topology
 4RTI A;  3LYD A;  2VT8 A;  3V7B A;  3WA5 B;  4N80 B;  2VU4 A;  1VR8 A;  4N7S B;  3BCY A;  4BQ6 D;  3HLZ A;  3NR5 A;  2XB3 A;  1EQ6 A;  1V2B A;  4M5F B;  4UI2 D;  3JCU P;  2LNJ A;  4N88 B;  1TU1 A;  4ESQ A;  4RTH A;  4BQ8 C;  4L9H A;  1JHS A;  4L9C A;  4LUQ C;  4OUH A; 
#chains in the Genus database with same CATH homology
 3JCU P;  3LYD A;  2LNJ A;  4RTI A;  3V7B A;  1V2B A;  1TU1 A;  4RTH A;  4UI2 D;  4BQ8 C;  1JHS A;  3HLZ A;  4BQ6 D;  2XB3 A;  2VU4 A;  1EQ6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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