3NR5A

Crystal structure of human maf1
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
159
structure length
157
Chain Sequence
HMKLLENSSFEAINSQLTVEDAHIIGRIESYSCKPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVNCSLFSAVREDFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVFFSCRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Basis of RNA Polymerase III Transcription Repression by Maf1
pubmed doi rcsb
molecule tags Transcription
source organism Homo sapiens
molecule keywords Repressor of RNA polymerase III transcription MAF1 homolog
total genus 48
structure length 157
sequence length 159
ec nomenclature
pdb deposition date 2010-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09174 Maf1 Maf1 regulator
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.50 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Protein Transport Mog1p; Chain A 3nr5A00
3NR5A
chains in the Genus database with same CATH superfamily
4L9CA 1VR8A 2VT8A 4N7SB 3WA5B 4M5FB 3JCUP 3HLZA 4RTHA 4L9HA 4ESQA 4BQ6D 4N88B 3NR5A 1V2BA 4LUQC 4UI2D 2XB3A 1JHSA 3BCYA 1TU1A 3LYDA 4RTIA 4N80B 4OUHA 2LNJA 4BQ8C 3V7BA 1EQ6A 2VU4A
chains in the Genus database with same CATH topology
4LUQC 3BCYA 4L9CA 4L9HA 4ESQA 4N80B 2VT8A 4OUHA 4N7SB 3WA5B 4M5FB 4N88B 3NR5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NR5 A; 
#chains in the Genus database with same CATH topology
 4L9C A;  1VR8 A;  2VT8 A;  4N7S B;  3WA5 B;  4M5F B;  3JCU P;  3HLZ A;  4RTH A;  4L9H A;  4ESQ A;  4BQ6 D;  4N88 B;  3NR5 A;  1V2B A;  4LUQ C;  4UI2 D;  2XB3 A;  1JHS A;  3BCY A;  1TU1 A;  3LYD A;  4RTI A;  4N80 B;  4OUH A;  2LNJ A;  4BQ8 C;  3V7B A;  1EQ6 A;  2VU4 A; 
#chains in the Genus database with same CATH homology
 4LUQ C;  3BCY A;  4L9C A;  4L9H A;  4ESQ A;  4N80 B;  2VT8 A;  4OUH A;  4N7S B;  3WA5 B;  4M5F B;  4N88 B;  3NR5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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