3RDZC

Crystal structure of rbti-trypsin complex at 2.26 angstrom resolution
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
67
structure length
67
Chain Sequence
QCSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTPVVM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYAH1 (18-28)TI1 (29-32)O7 (4-49)3H1 (11-13)TII1 (13-16)TI3 (57-60)S1 (16-17)S2 (33-38)TI2 (48-51)TII2 (38-41)O1 (25-155)S5 (67-68)S3 (51-57)S4 (61-62)Updating...
connected with : NaN
molecule tags Hydrolase/hydrolase inhibitor
source organism Fagopyrum esculentum
publication title Conformational Changes of rBTI from Buckwheat upon Binding to Trypsin: Implications for the Role of the P(8)' Residue in the Potato Inhibitor I Family
pubmed doi rcsb
molecule keywords Cationic trypsin
total genus 19
structure length 67
sequence length 67
chains with identical sequence D
ec nomenclature
pdb deposition date 2011-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00280 potato_inhibit Potato inhibitor I family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.10.10 Alpha Beta 2-Layer Sandwich Trypsin Inhibitor V; Chain A Trypsin Inhibitor V, subunit A 3rdzC00
1TM4I 1MEEI 1CSEI 1Y34I 1YPCI 2SNII 4B2CB 1SIBI 1TM7I 1Y1KI 1LW6I 1Y33I 1MITA 4B1TB 5FFNI 3RDYA 1TM1I 3RDZC 3W0DA 1EGLA 1VBWA 1YPBI 1Y3FI 4B2AB 1CISA 1DWMA 1Y4AI 1TMGI 5FBZB 4B2BB 1TO1I 3CI2A 1ACBI 1TECI 1TO2I 1Y3BI 1TM5I 3W0EA 1Y48I 1TINA 1Y4DI 2CI2I 1TM3I 1Y3CI 2TECI 1Y3DI 1COAI 1SBNI 1YPAI 3TECI 4H4FB 2SECI 1HYMA
chains in the Genus database with same CATH superfamily
1TM4I 1MEEI 1CSEI 1Y34I 1YPCI 2SNII 2KUFA 2KUDA 4B2CB 1SIBI 1TM7I 1Y1KI 1LW6I 1Y33I 1MITA 4B1TB 2KUEA 5FFNI 1TM1I 3RDYA 3RDZC 3W0DA 1EGLA 1VBWA 1YPBI 1Y3FI 4B2AB 1CISA 1DWMA 1Y4AI 1TMGI 5FBZB 4B2BB 3PY9A 5E0YA 1TO1I 3CI2A 1ACBI 1TECI 1TO2I 3OUVA 5E0ZA 1Y3BI 1TM5I 3W0EA 1Y48I 1TINA 2KUIA 1Y4DI 2CI2I 1TM3I 1Y3CI 2TECI 1Y3DI 1COAI 1SBNI 2MGVA 5E10A 3M9GA 1YPAI 3TECI 4H4FB 2SECI 1HYMA
chains in the Genus database with same CATH topology
1TM4I 1MEEI 1CSEI 1Y34I 1YPCI 2SNII 4B2CB 1SIBI 1TM7I 1Y1KI 1LW6I 1Y33I 1MITA 4B1TB 5FFNI 3RDYA 1TM1I 3RDZC 3W0DA 1EGLA 1VBWA 1YPBI 1Y3FI 4B2AB 1CISA 1DWMA 1Y4AI 1TMGI 5FBZB 4B2BB 1TO1I 3CI2A 1ACBI 1TECI 1TO2I 1Y3BI 1TM5I 3W0EA 1Y48I 1TINA 1Y4DI 2CI2I 1TM3I 1Y3CI 2TECI 1Y3DI 1COAI 1SBNI 1YPAI 3TECI 4H4FB 2SECI 1HYMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TM4 I;  1MEE I;  1CSE I;  1Y34 I;  1YPC I;  2SNI I;  4B2C B;  1SIB I;  1TM7 I;  1Y1K I;  1LW6 I;  1Y33 I;  1MIT A;  4B1T B;  5FFN I;  3RDY A;  1TM1 I;  3RDZ C;  3W0D A;  1EGL A;  1VBW A;  1YPB I;  1Y3F I;  4B2A B;  1CIS A;  1DWM A;  1Y4A I;  1TMG I;  5FBZ B;  4B2B B;  1TO1 I;  3CI2 A;  1ACB I;  1TEC I;  1TO2 I;  1Y3B I;  1TM5 I;  3W0E A;  1Y48 I;  1TIN A;  1Y4D I;  2CI2 I;  1TM3 I;  1Y3C I;  2TEC I;  1Y3D I;  1COA I;  1SBN I;  1YPA I;  3TEC I;  4H4F B;  2SEC I;  1HYM A; 
#chains in the Genus database with same CATH topology
 1TM4 I;  1MEE I;  1CSE I;  1Y34 I;  1YPC I;  2SNI I;  2KUF A;  2KUD A;  4B2C B;  1SIB I;  1TM7 I;  1Y1K I;  1LW6 I;  1Y33 I;  1MIT A;  4B1T B;  2KUE A;  5FFN I;  1TM1 I;  3RDY A;  3RDZ C;  3W0D A;  1EGL A;  1VBW A;  1YPB I;  1Y3F I;  4B2A B;  1CIS A;  1DWM A;  1Y4A I;  1TMG I;  5FBZ B;  4B2B B;  3PY9 A;  5E0Y A;  1TO1 I;  3CI2 A;  1ACB I;  1TEC I;  1TO2 I;  3OUV A;  5E0Z A;  1Y3B I;  1TM5 I;  3W0E A;  1Y48 I;  1TIN A;  2KUI A;  1Y4D I;  2CI2 I;  1TM3 I;  1Y3C I;  2TEC I;  1Y3D I;  1COA I;  1SBN I;  2MGV A;  5E10 A;  3M9G A;  1YPA I;  3TEC I;  4H4F B;  2SEC I;  1HYM A; 
#chains in the Genus database with same CATH homology
 1TM4 I;  1MEE I;  1CSE I;  1Y34 I;  1YPC I;  2SNI I;  4B2C B;  1SIB I;  1TM7 I;  1Y1K I;  1LW6 I;  1Y33 I;  1MIT A;  4B1T B;  5FFN I;  3RDY A;  1TM1 I;  3RDZ C;  3W0D A;  1EGL A;  1VBW A;  1YPB I;  1Y3F I;  4B2A B;  1CIS A;  1DWM A;  1Y4A I;  1TMG I;  5FBZ B;  4B2B B;  1TO1 I;  3CI2 A;  1ACB I;  1TEC I;  1TO2 I;  1Y3B I;  1TM5 I;  3W0E A;  1Y48 I;  1TIN A;  1Y4D I;  2CI2 I;  1TM3 I;  1Y3C I;  2TEC I;  1Y3D I;  1COA I;  1SBN I;  1YPA I;  3TEC I;  4H4F B;  2SEC I;  1HYM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.