3X27 | Genus

Total Genus 105

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	105
sequence length	309
structure length	309
Chain Sequence	QIEIEWVQPGITVTADLSWERNPELAELLWTGLLPYNSLQNHALVSGNHLYHLIADPRLVYTEARYKEDRTKSPDGTVFLSQLQHLAVKYGPLTEYLPAAPVGSVVPEDIDALREAGRACWKAAWETKQPIEVRVRRKGEAVTDFALPRTPPVDHPGVQKLVEEIQDETERVWITPPAEIVDMHQGRIASRAGSYDQYFSTLVFLNGEVRPLGYCALNGLLKICRTTDLTLNDLKRITPTFIKTPAEFLGYTGLDTLWRFTQQVLTLLPDVETREQYFALVNALALYANMLNTWNLHFFPWQHGTDYRY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 309 atoms

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309 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Marinactinospora thermotolerans
publication title	Structural Basis for beta-Carboline Alkaloid Production by the Microbial Homodimeric Enzyme McbB pubmed doi rcsb
molecule keywords	Cucumopine synthase
total genus	105
structure length	309
sequence length	309
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2014-12-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18631	Cucumopine_C	Cucumopine synthase C-terminal helical bundle domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.100.20	Mainly Beta	Beta Barrel	Cyclophilin	Cyclophilin	3x27A01

2KA0A 2NNZA 3X27A 3KOPA 1ZX8A
chains in the Genus database with same CATH superfamily

4YUIA 4J59A 1E8KA 1QOIA 3CYHA 3R49A 3MMLA 4HY7A 3T1UA 5CCNA 2NNZA 4DGDA 4S1JA 1MF8C 1VDNA 2X25B 4IPZA 4DGCA 4FRUA 1M9DA 2K7NA 4J5CX 2MZUA 4R3FA 5DUDA 5CYHA 2B71A 2PLUA 4N1RA 1XO7A 5KURA 3QYUA 2POYA 1OCAA 2CFEA 4O8IA 1CWLA 4DGEA 1QNHA 3RDCA 5KUOA 1VAIA 1CWOA 2GW2A 4E1QA 1RMHA 3R54A 5CBWA 5KV4A 4N1NA 2MS4A 2P0OA 2QERA 2Z6WA 3K0MA 1LOPA 3K0QA 3RCKX 2OK3A 5F66A 5CBUA 1AWTA 4DGAA 1CWKA 1MZWA 4YUJA 3RCLA 1AK4A 1A33A 2R99A 2RMCA 3UCHA 1ISTA 5KUNA 5KUWA 3R56A 4YULA 5KV6A 2IGWA 2X2CK 1X7FA 1CLHA 1H0PA 1CWFA 2ZP2A 4J5DX 3RD9X 5JHEA 3R59A 2BIUX 4N1PA 3MMLB 5KV7A 5KV3A 3X27A 5A0EA 5KUSA 3BT8A 5CBVA 4YUNA 2HAQA 1A58A 1AWQA 4N1QA 4N1SA 5KV1A 1QNGA 3K0NA 2IGVA 2X2AA 1E3BA 2WFIA 2MVZA 1AWUA 1CWMA 1XYHA 1FGLA 2POEA 2X2DB 4J58A 1DYWA 2PHCB 2X7KA 3R4GA 1ZX8A 2HQ6A 1M9EA 1AWVA 1V9TA 3ODLA 3VA7A 5KULA 3BO7A 5CCSX 3S6MA 2CK1A 2N0TA 1M9CA 4JCPA 4I9YA 1ZKCA 1XQ7A 1J2AA 3BKPA 3RDBA 4R3EA 5KUVA 5KV5A 5LUDA 3JB9d 5KUQA 1VBTA 1IHGA 4EYVA 3R57A 1W74A 3K2CA 5KUZA 2ESLA 3ODIA 3EOVA 5KV0A 2BITX 1IIPA 4YUMA 5CBTA 1VBSA 1YNDA 2HE9A 2RMAA 4J5BA 1AWSA 1M9YA 4DGBA 1MIKA 4ZSDA 1C5FA 4YUKA 5KV2A 1AWRA 2OSEA 3ICHA 3K0PA 4JJMA 3RDDA 5CCQA 5CCRA 1CWAA 1ZMFA 2FU0A 1CWBA 1M9XA 4YUGA 3RDAX 1CWCA 3OREA 1ZKFA 2RMBA 4N1MA 1W8VA 1XWNA 4LQWA 3CYSA 4S1EA 4CYHA 2WLWA 5KUUA 4O8HA 2WFJA 4ZSCA 1CWJA 1NMKA 4YUHA 1M9FA 2RS4A 3RCGA 4J5AX 4YUPA 2C3BA 2CMTA 4FRVA 2OJUA 3KOPA 4TOTA 3OEPA 2X83B 3K0OA 1CYNA 1W8MA 2ALFA 1W8LA 4XNCA 1CWIA 2CPLA 2A2NA 1Z81A 4N1OA 1BCKA 3K0RA 2MC9A 1M63C 3RFYA 3RCFA 4J5EX 2CYHA 2HQJA 3OPFA 2XGYB 2KA0A 3O7TA 4YUOA 3PMPA 3ICIA 1CWHA 3RCIX 2NULA
chains in the Genus database with same CATH topology

2KA0A 2NNZA 3X27A 3KOPA 1ZX8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2KA0 A;  2NNZ A;  3X27 A;  3KOP A;  1ZX8 A; 
#chains in the Genus database with same CATH topology
 4YUI A;  4J59 A;  1E8K A;  1QOI A;  3CYH A;  3R49 A;  3MML A;  4HY7 A;  3T1U A;  5CCN A;  2NNZ A;  4DGD A;  4S1J A;  1MF8 C;  1VDN A;  2X25 B;  4IPZ A;  4DGC A;  4FRU A;  1M9D A;  2K7N A;  4J5C X;  2MZU A;  4R3F A;  5DUD A;  5CYH A;  2B71 A;  2PLU A;  4N1R A;  1XO7 A;  5KUR A;  3QYU A;  2POY A;  1OCA A;  2CFE A;  4O8I A;  1CWL A;  4DGE A;  1QNH A;  3RDC A;  5KUO A;  1VAI A;  1CWO A;  2GW2 A;  4E1Q A;  1RMH A;  3R54 A;  5CBW A;  5KV4 A;  4N1N A;  2MS4 A;  2P0O A;  2QER A;  2Z6W A;  3K0M A;  1LOP A;  3K0Q A;  3RCK X;  2OK3 A;  5F66 A;  5CBU A;  1AWT A;  4DGA A;  1CWK A;  1MZW A;  4YUJ A;  3RCL A;  1AK4 A;  1A33 A;  2R99 A;  2RMC A;  3UCH A;  1IST A;  5KUN A;  5KUW A;  3R56 A;  4YUL A;  5KV6 A;  2IGW A;  2X2C K;  1X7F A;  1CLH A;  1H0P A;  1CWF A;  2ZP2 A;  4J5D X;  3RD9 X;  5JHE A;  3R59 A;  2BIU X;  4N1P A;  3MML B;  5KV7 A;  5KV3 A;  3X27 A;  5A0E A;  5KUS A;  3BT8 A;  5CBV A;  4YUN A;  2HAQ A;  1A58 A;  1AWQ A;  4N1Q A;  4N1S A;  5KV1 A;  1QNG A;  3K0N A;  2IGV A;  2X2A A;  1E3B A;  2WFI A;  2MVZ A;  1AWU A;  1CWM A;  1XYH A;  1FGL A;  2POE A;  2X2D B;  4J58 A;  1DYW A;  2PHC B;  2X7K A;  3R4G A;  1ZX8 A;  2HQ6 A;  1M9E A;  1AWV A;  1V9T A;  3ODL A;  3VA7 A;  5KUL A;  3BO7 A;  5CCS X;  3S6M A;  2CK1 A;  2N0T A;  1M9C A;  4JCP A;  4I9Y A;  1ZKC A;  1XQ7 A;  1J2A A;  3BKP A;  3RDB A;  4R3E A;  5KUV A;  5KV5 A;  5LUD A;  3JB9 d;  5KUQ A;  1VBT A;  1IHG A;  4EYV A;  3R57 A;  1W74 A;  3K2C A;  5KUZ A;  2ESL A;  3ODI A;  3EOV A;  5KV0 A;  2BIT X;  1IIP A;  4YUM A;  5CBT A;  1VBS A;  1YND A;  2HE9 A;  2RMA A;  4J5B A;  1AWS A;  1M9Y A;  4DGB A;  1MIK A;  4ZSD A;  1C5F A;  4YUK A;  5KV2 A;  1AWR A;  2OSE A;  3ICH A;  3K0P A;  4JJM A;  3RDD A;  5CCQ A;  5CCR A;  1CWA A;  1ZMF A;  2FU0 A;  1CWB A;  1M9X A;  4YUG A;  3RDA X;  1CWC A;  3ORE A;  1ZKF A;  2RMB A;  4N1M A;  1W8V A;  1XWN A;  4LQW A;  3CYS A;  4S1E A;  4CYH A;  2WLW A;  5KUU A;  4O8H A;  2WFJ A;  4ZSC A;  1CWJ A;  1NMK A;  4YUH A;  1M9F A;  2RS4 A;  3RCG A;  4J5A X;  4YUP A;  2C3B A;  2CMT A;  4FRV A;  2OJU A;  3KOP A;  4TOT A;  3OEP A;  2X83 B;  3K0O A;  1CYN A;  1W8M A;  2ALF A;  1W8L A;  4XNC A;  1CWI A;  2CPL A;  2A2N A;  1Z81 A;  4N1O A;  1BCK A;  3K0R A;  2MC9 A;  1M63 C;  3RFY A;  3RCF A;  4J5E X;  2CYH A;  2HQJ A;  3OPF A;  2XGY B;  2KA0 A;  3O7T A;  4YUO A;  3PMP A;  3ICI A;  1CWH A;  3RCI X;  2NUL A; 
#chains in the Genus database with same CATH homology
 2KA0 A;  2NNZ A;  3X27 A;  3KOP A;  1ZX8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3X27A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations