3CD6 | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	165
structure length	140
Chain Sequence	FHEMREPRIEKVVVHMGIGHANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLAELATSQFDDTGNFSFGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYDVEV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 140 atoms

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140 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	14
structure length	140
sequence length	165
ec nomenclature
pdb deposition date	2008-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00281	Ribosomal_L5	Ribosomal protein L5
D	PF00673	Ribosomal_L5_C	ribosomal L5P family C-terminus

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1440.10	Alpha Beta	2-Layer Sandwich	50s Ribosomal Protein L5; Chain: A,	50s Ribosomal Protein L5; Chain: A,	3cd6D00

2ZJPD 2OTLD 1K73F 5JVGD 1VQ7D 3D7AA 4IOCD 3CCMD 3C9GA 3CF5D 1QVGD 1KQSD 3CC4D 1M1KF 4IOAD 2OTJD 5DM6D 3I56D 1N8RF 1M90F 1VQ9D 2WNYA 3I55D 3G71D 1VQPD 3CD6D 3CC7D 1K9MF 1VQMD 1VQ5D 5JVHD 1VQND 3CCQD 1S72D 5GAHF 1KD1F 3G6ED 1Q81F 5GAGF 1YJ9D 1YIJD 3PIOD 2QEXD 1YJWD 4WFBD 3CCJD 3DLLD 3PIPD 1YITD 5H1SH 3CCSD 1YHQD 1VQLD 3G4SD 3CCVD 3J7ZF 4WF9D 3CCLD 1VQKD 3CMAD 1QVFD 1K8AF 1Q82F 1VQ8D 1MJIA 2PZZA 4U67D 1NJIF 4WCED 3CC2D 1Q7YF 3CMED 1JJ2D 2ZJQD 3CXCD 2NWUA 5DM7D 5HL7D 5GADF 1IQ4A 1VQOD 4WFND 2NRQA 3CPWD 5GAEF 1KC8F 4UY8F 5MLCG 1VQ6D 2ZJRD 2QA4D 1VQ4D 2OGKA 1W2BD 4IO9D 3OW2D 1YJND 3CCUD 1YI2D 3CCRD 3CCED 4WFAD 1Q86F
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2ZJP D;  2OTL D;  1K73 F;  5JVG D;  1VQ7 D;  3D7A A;  4IOC D;  3CCM D;  3C9G A;  3CF5 D;  1QVG D;  1KQS D;  3CC4 D;  1M1K F;  4IOA D;  2OTJ D;  5DM6 D;  3I56 D;  1N8R F;  1M90 F;  1VQ9 D;  2WNY A;  3I55 D;  3G71 D;  1VQP D;  3CD6 D;  3CC7 D;  1K9M F;  1VQM D;  1VQ5 D;  5JVH D;  1VQN D;  3CCQ D;  1S72 D;  5GAH F;  1KD1 F;  3G6E D;  1Q81 F;  5GAG F;  1YJ9 D;  1YIJ D;  3PIO D;  2QEX D;  1YJW D;  4WFB D;  3CCJ D;  3DLL D;  3PIP D;  1YIT D;  5H1S H;  3CCS D;  1YHQ D;  1VQL D;  3G4S D;  3CCV D;  3J7Z F;  4WF9 D;  3CCL D;  1VQK D;  3CMA D;  1QVF D;  1K8A F;  1Q82 F;  1VQ8 D;  1MJI A;  2PZZ A;  4U67 D;  1NJI F;  4WCE D;  3CC2 D;  1Q7Y F;  3CME D;  1JJ2 D;  2ZJQ D;  3CXC D;  2NWU A;  5DM7 D;  5HL7 D;  5GAD F;  1IQ4 A;  1VQO D;  4WFN D;  2NRQ A;  3CPW D;  5GAE F;  1KC8 F;  4UY8 F;  5MLC G;  1VQ6 D;  2ZJR D;  2QA4 D;  1VQ4 D;  2OGK A;  1W2B D;  4IO9 D;  3OW2 D;  1YJN D;  3CCU D;  1YI2 D;  3CCR D;  3CCE D;  4WFA D;  1Q86 F; 
#chains in the Genus database with same CATH topology
 2ZJP D;  2OTL D;  1K73 F;  5JVG D;  1VQ7 D;  3D7A A;  4IOC D;  3CCM D;  3C9G A;  3CF5 D;  1QVG D;  1KQS D;  3CC4 D;  1M1K F;  4IOA D;  2OTJ D;  5DM6 D;  3I56 D;  1N8R F;  1M90 F;  1VQ9 D;  2WNY A;  3I55 D;  3G71 D;  1VQP D;  3CD6 D;  3CC7 D;  1K9M F;  1VQM D;  1VQ5 D;  5JVH D;  1VQN D;  3CCQ D;  1S72 D;  5GAH F;  1KD1 F;  3G6E D;  1Q81 F;  5GAG F;  1YJ9 D;  1YIJ D;  3PIO D;  2QEX D;  1YJW D;  4WFB D;  3CCJ D;  3DLL D;  3PIP D;  1YIT D;  5H1S H;  3CCS D;  1YHQ D;  1VQL D;  3G4S D;  3CCV D;  3J7Z F;  4WF9 D;  3CCL D;  1VQK D;  3CMA D;  1QVF D;  1K8A F;  1Q82 F;  1VQ8 D;  1MJI A;  2PZZ A;  4U67 D;  1NJI F;  4WCE D;  3CC2 D;  1Q7Y F;  3CME D;  1JJ2 D;  2ZJQ D;  3CXC D;  2NWU A;  5DM7 D;  5HL7 D;  5GAD F;  1IQ4 A;  1VQO D;  4WFN D;  2NRQ A;  3CPW D;  5GAE F;  1KC8 F;  4UY8 F;  5MLC G;  1VQ6 D;  2ZJR D;  2QA4 D;  1VQ4 D;  2OGK A;  1W2B D;  4IO9 D;  3OW2 D;  1YJN D;  3CCU D;  1YI2 D;  3CCR D;  3CCE D;  4WFA D;  1Q86 F; 
#chains in the Genus database with same CATH homology
 2ZJP D;  2OTL D;  1K73 F;  5JVG D;  1VQ7 D;  3D7A A;  4IOC D;  3CCM D;  3C9G A;  3CF5 D;  1QVG D;  1KQS D;  3CC4 D;  1M1K F;  4IOA D;  2OTJ D;  5DM6 D;  3I56 D;  1N8R F;  1M90 F;  1VQ9 D;  2WNY A;  3I55 D;  3G71 D;  1VQP D;  3CD6 D;  3CC7 D;  1K9M F;  1VQM D;  1VQ5 D;  5JVH D;  1VQN D;  3CCQ D;  1S72 D;  5GAH F;  1KD1 F;  3G6E D;  1Q81 F;  5GAG F;  1YJ9 D;  1YIJ D;  3PIO D;  2QEX D;  1YJW D;  4WFB D;  3CCJ D;  3DLL D;  3PIP D;  1YIT D;  5H1S H;  3CCS D;  1YHQ D;  1VQL D;  3G4S D;  3CCV D;  3J7Z F;  4WF9 D;  3CCL D;  1VQK D;  3CMA D;  1QVF D;  1K8A F;  1Q82 F;  1VQ8 D;  1MJI A;  2PZZ A;  4U67 D;  1NJI F;  4WCE D;  3CC2 D;  1Q7Y F;  3CME D;  1JJ2 D;  2ZJQ D;  3CXC D;  2NWU A;  5DM7 D;  5HL7 D;  5GAD F;  1IQ4 A;  1VQO D;  4WFN D;  2NRQ A;  3CPW D;  5GAE F;  1KC8 F;  4UY8 F;  5MLC G;  1VQ6 D;  2ZJR D;  2QA4 D;  1VQ4 D;  2OGK A;  1W2B D;  4IO9 D;  3OW2 D;  1YJN D;  3CCU D;  1YI2 D;  3CCR D;  3CCE D;  4WFA D;  1Q86 F;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CD6D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations