4CVCA

Crystal structure of quinone-dependent alcohol dehydrogenase from pseudogluconobacter saccharoketogenenes with zinc in the active site
Total Genus 175

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
562
structure length
562
Chain Sequence
SAIENFQPVTADDLAGKNPANWPILRGNYQGWGYSPLDQINKDNVGDLQLVWSRTMEPGSNEGAAIAYNGVIFLGNTNDVIQAIDGKTGSLIWEYRRKLPSASKFINSLGAAKRSIALFGDKVYFVSWDNFVVALDAKTGKLAWETNRGQGVEEGVANSSGPIVVDGVVIAGSTCQFSGFGCYVTGTDAESGEELWRNTFIPRPGEEGDDTWGGAPYENRWMTGAWGQITYDPELDLVYYGSTGAGPASEVQRGTEGGTLAGTNTRFAVKPKTGEVVWKHQTLPRDNWDSECTFEMMVVSTSVNPDAKADGMMSVGANVPRGETRKVLTGVPCKTGVAWQFDAKTGDYFWSKATVEQNSIASIDDTGLVTVNEDMILKEPGKTYNYCPTFLGGRDWPSAGYLPKSNLYVIPLSNACYDVMARTTEATPADVYNTDATLVLAPGKTNMGRVDAIDLATGETKWSYETRAALYDPVLTTGGDLVFVGGIDRDFRALDAESGKEVWSTRLPGAVSGYTTSYSIDGRQYVAVVSGGSLGGPTFGPTTPDVDSASGANGIYVFALPE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
source organism Pseudogluconobacter saccharoketogenes
publication title Crystal Structure of Quinone-Dependent Alcohol Dehydrogenase from Pseudogluconobacter Saccharoketogenes. A Versatile Dehydrogenase Oxidizing Alcohols and Carbohydrates.
pubmed doi rcsb
molecule keywords ALCOHOL DEHYDROGENASE
total genus 175
structure length 562
sequence length 562
ec nomenclature ec 1.1.2.8: Alcohol dehydrogenase (cytochrome c).
pdb deposition date 2014-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 4cvcA00
1KV9A 1KB0A 1YIQA 2AD8A 2AD7A 4MH1A 1H4IA 4MAEA 1LRWA 2D0VA 1FLGA 1G72A 2AD6A 1W6SA 1H4JA 4AAHA 4CVBA 4CVCA 4TQOA
chains in the Genus database with same CATH superfamily
3NOXA 2JIDA 3G0CA 2OAGA 2QKYA 2AD7A 2D0VA 1WCYA 4DSAA 5T4FA 1PFQA 1HJ5A 4J3JA 5I7UA 3CCBA 2BGNA 1G72A 1W1IA 2AD6A 4DTCA 2I03A 4Q1VA 2BUAA 2BUCA 2DCMA 3H0CA 3O95A 2OGZA 1H9XA 1H4JA 2QOEA 2OQVA 5T4BA 1KV9A 3BJMA 2RIPA 2HHAA 3O9VA 2GBFA 1R9NA 1R9MA 4N8DA 2AD8A 1Z68A 4MH1A 3EIOA 2BGRA 4QZVA 3Q0TA 5J3JA 1ORVA 3Q8WA 2I3ZA 4FFVA 1E2RA 5T4HA 2AJ8A 1J2EA 2AJBA 1TK3A 2QJRA 5LLSA 2EEPA 2GBIA 2Z3ZA 3OC0A 4G1FA 3SX4A 2OQIA 3G0BA 4L72A 1TKRA 2ECFA 2OAEA 5ISMA 4DSZA 2G5PA 2Z3WA 4CVCA 1GQ1A 1RWQA 2QT9A 1NU6A 4TQOA 1KB0A 3F8SA 1AOMA 1YIQA 2G5TA 2GBGA 1HJ3A 2BUBA 2QTBA 3KWJA 4LKOA 1BL9A 2IIVA 4PNZA 5T4EA 2OPHA 1ORWA 1FLGA 3KWFA 2P8SA 2RGUA 1X70A 1H9YA 3WQHA 2IITA 1QKSA 4JH0A 2AJDA 4AAHA 4A5SA 4CVBA 5KBYA 1GJQA 1N90A 1HZVA 1N15A 3G0GA 3SWWA 1DY7A 2FJPA 1N50A 2G63A 3VJMA 3W2TA 3C43A 1AOQA 1H4IA 1HJ4A 4MAEA 1LRWA 1NU8A 4WJLA 3OPMA 3D4LA 3VJKA 3G0DA 2AJCA 1U8EA 2AJLI 4FFWA 1XFDA 1HZUA 2ONCA 1W6SA 2I78A 1N1MA 1NNOA 1HCMA 3C45A 3HABA 1AOFA 4PV7A 3CCCA 2OLEA 3HACA 4KR0A 2D5LA 4N8EA 3VJLA 1NIRA 3QBJA 2GBCA
chains in the Genus database with same CATH topology
1KV9A 1KB0A 1YIQA 2AD8A 2AD7A 4MH1A 1H4IA 4MAEA 1LRWA 2D0VA 1FLGA 1G72A 2AD6A 1W6SA 1H4JA 4AAHA 4CVBA 4CVCA 4TQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KV9 A;  1KB0 A;  1YIQ A;  2AD8 A;  2AD7 A;  4MH1 A;  1H4I A;  4MAE A;  1LRW A;  2D0V A;  1FLG A;  1G72 A;  2AD6 A;  1W6S A;  1H4J A;  4AAH A;  4CVB A;  4CVC A;  4TQO A; 
#chains in the Genus database with same CATH topology
 3NOX A;  2JID A;  3G0C A;  2OAG A;  2QKY A;  2AD7 A;  2D0V A;  1WCY A;  4DSA A;  5T4F A;  1PFQ A;  1HJ5 A;  4J3J A;  5I7U A;  3CCB A;  2BGN A;  1G72 A;  1W1I A;  2AD6 A;  4DTC A;  2I03 A;  4Q1V A;  2BUA A;  2BUC A;  2DCM A;  3H0C A;  3O95 A;  2OGZ A;  1H9X A;  1H4J A;  2QOE A;  2OQV A;  5T4B A;  1KV9 A;  3BJM A;  2RIP A;  2HHA A;  3O9V A;  2GBF A;  1R9N A;  1R9M A;  4N8D A;  2AD8 A;  1Z68 A;  4MH1 A;  3EIO A;  2BGR A;  4QZV A;  3Q0T A;  5J3J A;  1ORV A;  3Q8W A;  2I3Z A;  4FFV A;  1E2R A;  5T4H A;  2AJ8 A;  1J2E A;  2AJB A;  1TK3 A;  2QJR A;  5LLS A;  2EEP A;  2GBI A;  2Z3Z A;  3OC0 A;  4G1F A;  3SX4 A;  2OQI A;  3G0B A;  4L72 A;  1TKR A;  2ECF A;  2OAE A;  5ISM A;  4DSZ A;  2G5P A;  2Z3W A;  4CVC A;  1GQ1 A;  1RWQ A;  2QT9 A;  1NU6 A;  4TQO A;  1KB0 A;  3F8S A;  1AOM A;  1YIQ A;  2G5T A;  2GBG A;  1HJ3 A;  2BUB A;  2QTB A;  3KWJ A;  4LKO A;  1BL9 A;  2IIV A;  4PNZ A;  5T4E A;  2OPH A;  1ORW A;  1FLG A;  3KWF A;  2P8S A;  2RGU A;  1X70 A;  1H9Y A;  3WQH A;  2IIT A;  1QKS A;  4JH0 A;  2AJD A;  4AAH A;  4A5S A;  4CVB A;  5KBY A;  1GJQ A;  1N90 A;  1HZV A;  1N15 A;  3G0G A;  3SWW A;  1DY7 A;  2FJP A;  1N50 A;  2G63 A;  3VJM A;  3W2T A;  3C43 A;  1AOQ A;  1H4I A;  1HJ4 A;  4MAE A;  1LRW A;  1NU8 A;  4WJL A;  3OPM A;  3D4L A;  3VJK A;  3G0D A;  2AJC A;  1U8E A;  2AJL I;  4FFW A;  1XFD A;  1HZU A;  2ONC A;  1W6S A;  2I78 A;  1N1M A;  1NNO A;  1HCM A;  3C45 A;  3HAB A;  1AOF A;  4PV7 A;  3CCC A;  2OLE A;  3HAC A;  4KR0 A;  2D5L A;  4N8E A;  3VJL A;  1NIR A;  3QBJ A;  2GBC A; 
#chains in the Genus database with same CATH homology
 1KV9 A;  1KB0 A;  1YIQ A;  2AD8 A;  2AD7 A;  4MH1 A;  1H4I A;  4MAE A;  1LRW A;  2D0V A;  1FLG A;  1G72 A;  2AD6 A;  1W6S A;  1H4J A;  4AAH A;  4CVB A;  4CVC A;  4TQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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