4L9HA

Crystal structure of the fp domain of human f-box protein fbxo7(semet)
Total Genus 36
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
155
structure length
155
Chain Sequence
GPSSPHSLETLYQSADCSDANDALIVLIHLLMLESGYIPQGTEAKALSMPEKWKLSGVYKLQYMHPLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKRLQLLPESFICKEKLGENVANIYKDLQKLSRLFKDQLVYPLLAFTRQALNLPDVF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of the FP domain of Fbxo7 reveals a novel mode of protein-protein interaction.
pubmed doi rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords F-box only protein 7
total genus 36
structure length 155
sequence length 155
ec nomenclature
pdb deposition date 2013-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11566 PI31_Prot_N PI31 proteasome regulator N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.30 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Protein Transport Mog1p; Chain A 4l9hA00
4OUHA 2VT8A 4L9HA 4L9CA
chains in the Genus database with same CATH superfamily
4M5FB 1V2BA 4ESQA 4L9CA 3NR5A 3V7BA 4N7SB 2XB3A 4N88B 4OUHA 4RTHA 1EQ6A 3JCUP 4LUQC 3WA5B 4L9HA 3BCYA 1JHSA 1VR8A 2VU4A 3LYDA 4BQ8C 3HLZA 1TU1A 4RTIA 4N80B 2LNJA 4BQ6D 2VT8A 4UI2D
chains in the Genus database with same CATH topology
4M5FB 4N88B 4N80B 4OUHA 4ESQA 2VT8A 4LUQC 4L9CA 3WA5B 3NR5A 4L9HA 3BCYA 4N7SB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OUH A;  2VT8 A;  4L9H A;  4L9C A; 
#chains in the Genus database with same CATH topology
 4M5F B;  1V2B A;  4ESQ A;  4L9C A;  3NR5 A;  3V7B A;  4N7S B;  2XB3 A;  4N88 B;  4OUH A;  4RTH A;  1EQ6 A;  3JCU P;  4LUQ C;  3WA5 B;  4L9H A;  3BCY A;  1JHS A;  1VR8 A;  2VU4 A;  3LYD A;  4BQ8 C;  3HLZ A;  1TU1 A;  4RTI A;  4N80 B;  2LNJ A;  4BQ6 D;  2VT8 A;  4UI2 D; 
#chains in the Genus database with same CATH homology
 4M5F B;  4N88 B;  4N80 B;  4OUH A;  4ESQ A;  2VT8 A;  4LUQ C;  4L9C A;  3WA5 B;  3NR5 A;  4L9H A;  3BCY A;  4N7S B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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