4LIM | Genus

Total Genus 143

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	143
sequence length	388
structure length	381
Chain Sequence	GANGPSSSDMEYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQIEKANPDRFEIGAIYNKPPREELKALEKELVFDIDMDDYDAFRTCCSGAQVCSKCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYVNVIRDRNTDKRLALKRPYHPHLARSLEQLKPFFVSIMLEEQNPWEDDQHAIQTLLPALYDKQLIDSLKKYWLDNPRRSSKEKWNDIDQIATSLFKGPKQDSHIIKLRECKEDLVLMTLYPKLDVEVTKQTIHLLKAPFCIHPATGNVCVPIDESFAPEKAPKLIDLQTEMEKNNDVSLTALQPFINQFQAYVSSLLKNELGS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 381 atoms

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381 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Insights into Eukaryotic Primer Synthesis from Structures of the p48 Subunit of Human DNA Primase. pubmed doi rcsb
molecule keywords	DNA primase small subunit
molecule tags	Transferase
source organism	Saccharomyces cerevisiae
total genus	143
structure length	381
sequence length	388
ec nomenclature	ec 2.7.7.-:
pdb deposition date	2013-07-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01896	DNA_primase_S	DNA primase small subunit

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.920.30	Alpha Beta	Alpha-Beta Complex	DNA primase, PRIM domain	DNA primase, PRIM domain	4limA00

4LIKA 5EXRA 1ZT2A 2FAQA 4BPWA 4BPUA 4BPXA 2FARA 2FAOA 4MM2A 4LIMA 4MHQA 4LILA 4RR2A
chains in the Genus database with same CATH superfamily

4LIKA 5EXRA 1ZT2A 1G71A 2ATZA 2FAQA 4BPWA 4BPUA 4BPXA 2FARA 1V34A 2FAOA 4MM2A 4LIMA 4MHQA 4LILA 4RR2A 1V33A
chains in the Genus database with same CATH topology

4LIKA 5EXRA 1ZT2A 1G71A 2FAQA 4BPWA 4BPUA 4BPXA 2FARA 1V34A 2FAOA 4MM2A 4LIMA 4MHQA 4LILA 4RR2A 1V33A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4LIK A;  5EXR A;  1ZT2 A;  2FAQ A;  4BPW A;  4BPU A;  4BPX A;  2FAR A;  2FAO A;  4MM2 A;  4LIM A;  4MHQ A;  4LIL A;  4RR2 A; 
#chains in the Genus database with same CATH topology
 4LIK A;  5EXR A;  1ZT2 A;  1G71 A;  2ATZ A;  2FAQ A;  4BPW A;  4BPU A;  4BPX A;  2FAR A;  1V34 A;  2FAO A;  4MM2 A;  4LIM A;  4MHQ A;  4LIL A;  4RR2 A;  1V33 A; 
#chains in the Genus database with same CATH homology
 4LIK A;  5EXR A;  1ZT2 A;  1G71 A;  2FAQ A;  4BPW A;  4BPU A;  4BPX A;  2FAR A;  1V34 A;  2FAO A;  4MM2 A;  4LIM A;  4MHQ A;  4LIL A;  4RR2 A;  1V33 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4LIMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations