4MAEA

Methanol dehydrogenase from methylacidiphilum fumariolicum solv
Total Genus 188
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
188
sequence length
577
structure length
577
Chain Sequence
NDELIKLEKEPGQWVMQNKNYANTRYSELNQINTKNVSRLRLAWSFSTGALRGHEGGPLVVGTTMYVHSAYPNHVYALDLTQKPYAIKWQYTPVQNSQAVAVACCDVVNRGLAYANGKIFMTTLDGQIIALDANTGKELWKMKHADVTKGETITGAPLVVKDKVLVGVSGGEFGVRGRVGAYDINTGNRVWLAYSQGPDEEVLLDSDFNKEFPQHGGPGDGTKTWPGEQWKLGGGTTWGWYSYDPALDLFYYGTSNPGTWNAEQRKGGDNKWSCTIFARRPDTGKARWAYQMTPWDSWDYDGVNEMILPDLTVKGKKTPCLVHFDRNGFGYVLDRRTGQLIEAQPFVYVNWAKEISKENDRPVEIPEKRTKQGVDTKGICPNSMGGKDQQPAAFSPQTGLFYVPTNNMCMNYEGVEATYTAGAPYVGANVLMYSGHEGKDDYYGAFICYDALKGKRVWEIHEHFPVWSGPVVTAGGLAFYGTMDGWFKAVDIKTGKVLWQQKLGSGIIGNPITFLGPDKKQYVAVYSGVGGWFGIAVAQNLPPDDPYAGLGAVGVAYQAGLPKATTVGGELYVFALE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Oxidoreductase
publication title Rare earth metals are essential for methanotrophic life in volcanic mudpots.
pubmed doi rcsb
molecule keywords Methanol dehydrogenase
total genus 188
structure length 577
sequence length 577
chains with identical sequence B
ec nomenclature ec 1.1.2.7: Methanol dehydrogenase (cytochrome c).
pdb deposition date 2013-08-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13360 PQQ_2 PQQ-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.140.10.10 Mainly Beta 8 Propeller Methanol Dehydrogenase; Chain A Quinoprotein alcohol dehydrogenase-like superfamily 4maeA00
4CVBA 4AAHA 2AD8A 2AD6A 1H4IA 1KV9A 1LRWA 4MAEA 4CVCA 1W6SA 4MH1A 1H4JA 1YIQA 1KB0A 2D0VA 1FLGA 2AD7A 4TQOA 1G72A
chains in the Genus database with same CATH superfamily
3BJMA 2Z3WA 1N90A 4N8EA 2AJCA 3G0GA 2AD6A 2AD8A 1H4IA 3KWJA 1Z68A 1LRWA 1NU6A 1WCYA 3D4LA 2GBFA 2I78A 2GBGA 4LKOA 4MH1A 3G0CA 3HACA 3EIOA 2OAGA 5KBYA 2AJ8A 1QKSA 3O95A 2BGNA 5ISMA 3VJMA 4L72A 3Q0TA 1E2RA 5T4FA 1NIRA 3WQHA 3W2TA 2IIVA 2AJLI 4FFVA 1HJ5A 2IITA 2BGRA 1HJ4A 4CVBA 1X70A 3G0DA 1TK3A 4WJLA 1N1MA 1U8EA 2D5LA 3C43A 2AJDA 4N8DA 3CCCA 2ONCA 1YIQA 2I3ZA 2ECFA 2BUBA 1J2EA 1ORVA 2AD7A 4TQOA 2BUCA 2OGZA 4Q1VA 4J3JA 3O9VA 4KR0A 3QBJA 4DSZA 1GQ1A 2AJBA 2RIPA 2OAEA 2Z3ZA 1N50A 2OLEA 2QT9A 4AAHA 3VJLA 1KV9A 2QOEA 3Q8WA 4DSAA 2QJRA 3NOXA 2G5TA 2GBCA 4CVCA 1RWQA 1N15A 1PFQA 2G63A 3H0CA 1H9YA 2DCMA 1R9NA 2OQIA 1ORWA 1KB0A 4PV7A 1HZUA 1GJQA 3CCBA 3G0BA 1FLGA 3VJKA 2OPHA 2G5PA 2I03A 1H9XA 1NU8A 3F8SA 2QKYA 2HHAA 5T4BA 3OPMA 3SX4A 2FJPA 2P8SA 1AOFA 2RGUA 5T4EA 4DTCA 4MAEA 5LLSA 5I7UA 2JIDA 1HJ3A 2EEPA 1XFDA 1W6SA 4JH0A 1W1IA 4FFWA 1H4JA 3SWWA 3OC0A 4G1FA 3HABA 4A5SA 1R9MA 5J3JA 1BL9A 2GBIA 2D0VA 2OQVA 1DY7A 1HZVA 1TKRA 2BUAA 4QZVA 1NNOA 1HCMA 5T4HA 1AOMA 1AOQA 3KWFA 2QTBA 3C45A 4PNZA 1G72A
chains in the Genus database with same CATH topology
4CVBA 4AAHA 2AD8A 2AD6A 1H4IA 1KV9A 1LRWA 4MAEA 4CVCA 1W6SA 4MH1A 1H4JA 1YIQA 1KB0A 2D0VA 1FLGA 2AD7A 4TQOA 1G72A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4CVB A;  4AAH A;  2AD8 A;  2AD6 A;  1H4I A;  1KV9 A;  1LRW A;  4MAE A;  4CVC A;  1W6S A;  4MH1 A;  1H4J A;  1YIQ A;  1KB0 A;  2D0V A;  1FLG A;  2AD7 A;  4TQO A;  1G72 A; 
#chains in the Genus database with same CATH topology
 3BJM A;  2Z3W A;  1N90 A;  4N8E A;  2AJC A;  3G0G A;  2AD6 A;  2AD8 A;  1H4I A;  3KWJ A;  1Z68 A;  1LRW A;  1NU6 A;  1WCY A;  3D4L A;  2GBF A;  2I78 A;  2GBG A;  4LKO A;  4MH1 A;  3G0C A;  3HAC A;  3EIO A;  2OAG A;  5KBY A;  2AJ8 A;  1QKS A;  3O95 A;  2BGN A;  5ISM A;  3VJM A;  4L72 A;  3Q0T A;  1E2R A;  5T4F A;  1NIR A;  3WQH A;  3W2T A;  2IIV A;  2AJL I;  4FFV A;  1HJ5 A;  2IIT A;  2BGR A;  1HJ4 A;  4CVB A;  1X70 A;  3G0D A;  1TK3 A;  4WJL A;  1N1M A;  1U8E A;  2D5L A;  3C43 A;  2AJD A;  4N8D A;  3CCC A;  2ONC A;  1YIQ A;  2I3Z A;  2ECF A;  2BUB A;  1J2E A;  1ORV A;  2AD7 A;  4TQO A;  2BUC A;  2OGZ A;  4Q1V A;  4J3J A;  3O9V A;  4KR0 A;  3QBJ A;  4DSZ A;  1GQ1 A;  2AJB A;  2RIP A;  2OAE A;  2Z3Z A;  1N50 A;  2OLE A;  2QT9 A;  4AAH A;  3VJL A;  1KV9 A;  2QOE A;  3Q8W A;  4DSA A;  2QJR A;  3NOX A;  2G5T A;  2GBC A;  4CVC A;  1RWQ A;  1N15 A;  1PFQ A;  2G63 A;  3H0C A;  1H9Y A;  2DCM A;  1R9N A;  2OQI A;  1ORW A;  1KB0 A;  4PV7 A;  1HZU A;  1GJQ A;  3CCB A;  3G0B A;  1FLG A;  3VJK A;  2OPH A;  2G5P A;  2I03 A;  1H9X A;  1NU8 A;  3F8S A;  2QKY A;  2HHA A;  5T4B A;  3OPM A;  3SX4 A;  2FJP A;  2P8S A;  1AOF A;  2RGU A;  5T4E A;  4DTC A;  4MAE A;  5LLS A;  5I7U A;  2JID A;  1HJ3 A;  2EEP A;  1XFD A;  1W6S A;  4JH0 A;  1W1I A;  4FFW A;  1H4J A;  3SWW A;  3OC0 A;  4G1F A;  3HAB A;  4A5S A;  1R9M A;  5J3J A;  1BL9 A;  2GBI A;  2D0V A;  2OQV A;  1DY7 A;  1HZV A;  1TKR A;  2BUA A;  4QZV A;  1NNO A;  1HCM A;  5T4H A;  1AOM A;  1AOQ A;  3KWF A;  2QTB A;  3C45 A;  4PNZ A;  1G72 A; 
#chains in the Genus database with same CATH homology
 4CVB A;  4AAH A;  2AD8 A;  2AD6 A;  1H4I A;  1KV9 A;  1LRW A;  4MAE A;  4CVC A;  1W6S A;  4MH1 A;  1H4J A;  1YIQ A;  1KB0 A;  2D0V A;  1FLG A;  2AD7 A;  4TQO A;  1G72 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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