4N80B

Crystal structure of tse3-tsi3 complex
Total Genus 23
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
122
structure length
122
Chain Sequence
DFDKTLTHPNGLVVERPVGFDARRSAEGFRFDEGGKLRNPRQLEVQRQDAPPPPDLASRRLGDGEARYKVEEDDGGSAGSEYRLWAAKPAGARWIVVSASEQSEDGEPTFALAWALLERARL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
pubmed doi rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
molecule keywords Uncharacterized protein
total genus 23
structure length 122
sequence length 122
ec nomenclature
pdb deposition date 2013-10-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.60 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Protein Transport Mog1p; Chain A 4n80B00
4N88B 3WA5B 4N80B 4M5FB 4N7SB 4LUQC
chains in the Genus database with same CATH superfamily
4RTIA 3LYDA 2VT8A 3V7BA 3WA5B 4N80B 2VU4A 1VR8A 4N7SB 3BCYA 4BQ6D 3HLZA 3NR5A 2XB3A 1EQ6A 1V2BA 4M5FB 4UI2D 3JCUP 2LNJA 4N88B 1TU1A 4ESQA 4RTHA 4BQ8C 4L9HA 1JHSA 4L9CA 4LUQC 4OUHA
chains in the Genus database with same CATH topology
2VT8A 4N88B 3WA5B 4ESQA 4N80B 4L9HA 4M5FB 3BCYA 4N7SB 3NR5A 4L9CA 4LUQC 4OUHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N88 B;  3WA5 B;  4N80 B;  4M5F B;  4N7S B;  4LUQ C; 
#chains in the Genus database with same CATH topology
 4RTI A;  3LYD A;  2VT8 A;  3V7B A;  3WA5 B;  4N80 B;  2VU4 A;  1VR8 A;  4N7S B;  3BCY A;  4BQ6 D;  3HLZ A;  3NR5 A;  2XB3 A;  1EQ6 A;  1V2B A;  4M5F B;  4UI2 D;  3JCU P;  2LNJ A;  4N88 B;  1TU1 A;  4ESQ A;  4RTH A;  4BQ8 C;  4L9H A;  1JHS A;  4L9C A;  4LUQ C;  4OUH A; 
#chains in the Genus database with same CATH homology
 2VT8 A;  4N88 B;  3WA5 B;  4ESQ A;  4N80 B;  4L9H A;  4M5F B;  3BCY A;  4N7S B;  3NR5 A;  4L9C A;  4LUQ C;  4OUH A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...