4N88B

Crystal structure of tse3-tsi3 complex with calcium ion
Total Genus 17
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
120
structure length
120
Chain Sequence
MTLTHPNGLVVERPVGFDARRSAEGFRFDEGGKLRNPRQLEVQRQDAPPPPDLASRRLGDGEARYKVEEDDGGSAGSEYRLWAAKPAGARWIVVSASEQSEDGEPTFALAWALLERARLQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural insights into the T6SS effector protein Tse3 and the Tse3-Tsi3 complex from Pseudomonas aeruginosa reveal a calcium-dependent membrane-binding mechanism
pubmed doi rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
molecule keywords Uncharacterized protein
total genus 17
structure length 120
sequence length 120
chains with identical sequence D
ec nomenclature
pdb deposition date 2013-10-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.60 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Protein Transport Mog1p; Chain A 4n88B00
4N80B 3WA5B 4M5FB 4N88B 4LUQC 4N7SB
chains in the Genus database with same CATH superfamily
4N80B 3WA5B 1V2BA 2VT8A 4OUHA 4N88B 4RTHA 3V7BA 4M5FB 1VR8A 1JHSA 4BQ8C 4ESQA 3NR5A 4BQ6D 2LNJA 3JCUP 4L9CA 4N7SB 1TU1A 1EQ6A 4RTIA 3LYDA 3BCYA 4UI2D 4L9HA 4LUQC 2XB3A 3HLZA 2VU4A
chains in the Genus database with same CATH topology
4N80B 3BCYA 3WA5B 2VT8A 3NR5A 4M5FB 4ESQA 4OUHA 4L9HA 4LUQC 4L9CA 4N88B 4N7SB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4N80 B;  3WA5 B;  4M5F B;  4N88 B;  4LUQ C;  4N7S B; 
#chains in the Genus database with same CATH topology
 4N80 B;  3WA5 B;  1V2B A;  2VT8 A;  4OUH A;  4N88 B;  4RTH A;  3V7B A;  4M5F B;  1VR8 A;  1JHS A;  4BQ8 C;  4ESQ A;  3NR5 A;  4BQ6 D;  2LNJ A;  3JCU P;  4L9C A;  4N7S B;  1TU1 A;  1EQ6 A;  4RTI A;  3LYD A;  3BCY A;  4UI2 D;  4L9H A;  4LUQ C;  2XB3 A;  3HLZ A;  2VU4 A; 
#chains in the Genus database with same CATH homology
 4N80 B;  3BCY A;  3WA5 B;  2VT8 A;  3NR5 A;  4M5F B;  4ESQ A;  4OUH A;  4L9H A;  4LUQ C;  4L9C A;  4N88 B;  4N7S B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...