The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
54
|
sequence length |
164
|
structure length |
164
|
Chain Sequence |
GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
High-resolution crystal structures of two crystal forms of human cyclophilin D in complex with PEG 400 molecules.
pubmed doi rcsb |
| molecule keywords |
Peptidyl-prolyl cis-trans isomerase F, mitochondrial
|
| molecule tags |
Isomerase
|
| source organism |
Homo sapiens
|
| total genus |
54
|
| structure length |
164
|
| sequence length |
164
|
| ec nomenclature |
ec
5.2.1.8: Peptidylprolyl isomerase. |
| pdb deposition date | 2013-12-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Cyclophilin | Cyclophilin-like |
#chains in the Genus database with same CATH superfamily 1QNH A; 1W8V A; 5CCR A; 1MF8 C; 1XWN A; 4O8I A; 5CBU A; 4J5A X; 1MZW A; 2RMA A; 3RFY A; 2CPL A; 3K0P A; 3CYS A; 2MC9 A; 5LUD A; 2IGV A; 2RS4 A; 2XGY B; 3RCK X; 1E3B A; 2HE9 A; 3K0R A; 1AWT A; 5DUD A; 3RDA X; 5CBT A; 1M9D A; 3ICH A; 1M63 C; 1IHG A; 5KV5 A; 5A0E A; 2FU0 A; 3K0N A; 3OEP A; 2WFI A; 4S1E A; 4XNC A; 1A58 A; 4EYV A; 1QOI A; 1CWL A; 3R56 A; 2HAQ A; 4YUO A; 4YUM A; 3S6M A; 1C5F A; 2BIT X; 2X25 B; 1X7F A; 1M9X A; 1CWC A; 4ZSD A; 3UCH A; 1MIK A; 4R3E A; 4DGC A; 5KV6 A; 1M9C A; 2R99 A; 5KV7 A; 3JB9 d; 4O8H A; 5KUR A; 2A2N A; 2X2D B; 3ODI A; 2C3B A; 3ODL A; 1ZMF A; 1VBS A; 2IGW A; 4J59 A; 1LOP A; 2PHC B; 5CBW A; 5F66 A; 5CCN A; 1CWA A; 2X7K A; 4FRU A; 4HY7 A; 3ICI A; 2RMC A; 3QYU A; 1M9Y A; 1NMK A; 5KV3 A; 2HQJ A; 2RMB A; 2X2A A; 1AK4 A; 1ZKF A; 2N0T A; 2QER A; 4YUN A; 5KV1 A; 2P0O A; 3K0M A; 4J5B A; 2X2C K; 4DGB A; 4N1P A; 1CWM A; 5JHE A; 2MS4 A; 4JCP A; 5KUW A; 2CK1 A; 4FRV A; 4J5E X; 4J58 A; 1M9F A; 2MZU A; 3CYH A; 4TOT A; 1VAI A; 3RCL A; 5KUL A; 5CCS X; 2GW2 A; 2K7N A; 3RCI X; 1AWQ A; 1RMH A; 1AWV A; 4J5D X; 1YND A; 2OSE A; 1CWI A; 2POY A; 4S1J A; 4R3F A; 5KV0 A; 4DGA A; 5KUU A; 3PMP A; 5KV4 A; 2PLU A; 3OPF A; 3R49 A; 2ZP2 A; 3RDC A; 1CWO A; 4N1Q A; 5CCQ A; 4N1M A; 4IPZ A; 2NUL A; 1AWR A; 2OK3 A; 4ZSC A; 1VDN A; 5KUV A; 4I9Y A; 1W8L A; 2CMT A; 3R59 A; 4N1S A; 2X83 B; 3R54 A; 3K0Q A; 1QNG A; 1IIP A; 2WFJ A; 3R4G A; 2POE A; 5KV2 A; 2MVZ A; 4LQW A; 2WLW A; 1CWK A; 1M9E A; 2CFE A; 4YUL A; 1XO7 A; 1A33 A; 5KUO A; 1ZKC A; 3MML A; 2OJU A; 2ALF A; 1E8K A; 1AWU A; 3BT8 A; 4YUK A; 4N1R A; 1CWF A; 1V9T A; 2HQ6 A; 3O7T A; 4YUP A; 1CLH A; 3RCF A; 4DGD A; 1FGL A; 1CWH A; 2Z6W A; 3BKP A; 1J2A A; 3MML B; 5CBV A; 2BIU X; 2B71 A; 3EOV A; 3RCG A; 1OCA A; 1H0P A; 4YUI A; 4YUH A; 1W8M A; 3RDD A; 3RDB A; 1W74 A; 4CYH A; 4YUG A; 1XQ7 A; 3RD9 X; 3R57 A; 3T1U A; 4N1N A; 4JJM A; 2CYH A; 3K0O A; 1CWJ A; 4E1Q A; 1CYN A; 5KUN A; 5KUS A; 5CYH A; 1IST A; 4N1O A; 1XYH A; 1Z81 A; 4DGE A; 1AWS A; 1BCK A; 1DYW A; 3ORE A; 1CWB A; 4J5C X; 1VBT A; 2ESL A; 5KUZ A; 3VA7 A; 3K2C A; 5KUQ A; 3BO7 A; 4YUJ A; #chains in the Genus database with same CATH topology 1QNH A; 1W8V A; 5CCR A; 1MF8 C; 1XWN A; 4O8I A; 5CBU A; 4J5A X; 1MZW A; 2RMA A; 3RFY A; 2CPL A; 3K0P A; 3CYS A; 2MC9 A; 5LUD A; 2IGV A; 2RS4 A; 2XGY B; 3RCK X; 1E3B A; 2HE9 A; 3K0R A; 1AWT A; 5DUD A; 3RDA X; 5CBT A; 1M9D A; 3ICH A; 1M63 C; 1IHG A; 5KV5 A; 5A0E A; 2FU0 A; 3K0N A; 3OEP A; 2WFI A; 4S1E A; 4XNC A; 1A58 A; 4EYV A; 1QOI A; 1CWL A; 3R56 A; 3KOP A; 2HAQ A; 4YUO A; 4YUM A; 3S6M A; 1C5F A; 2BIT X; 2X25 B; 1X7F A; 1M9X A; 1CWC A; 4ZSD A; 3UCH A; 1MIK A; 4R3E A; 4DGC A; 5KV6 A; 1M9C A; 2R99 A; 5KV7 A; 3JB9 d; 4O8H A; 5KUR A; 2A2N A; 2X2D B; 3ODI A; 2C3B A; 3ODL A; 1ZMF A; 1VBS A; 2IGW A; 4J59 A; 1LOP A; 2PHC B; 5CBW A; 5F66 A; 5CCN A; 1CWA A; 2X7K A; 4FRU A; 4HY7 A; 3ICI A; 2RMC A; 3QYU A; 1M9Y A; 1NMK A; 5KV3 A; 2HQJ A; 2RMB A; 2X2A A; 1AK4 A; 1ZKF A; 2N0T A; 2QER A; 4YUN A; 5KV1 A; 2P0O A; 3K0M A; 4J5B A; 2X2C K; 4DGB A; 4N1P A; 1CWM A; 5JHE A; 2MS4 A; 4JCP A; 5KUW A; 2CK1 A; 4FRV A; 4J5E X; 4J58 A; 1M9F A; 2MZU A; 3CYH A; 4TOT A; 1VAI A; 3RCL A; 5KUL A; 5CCS X; 2GW2 A; 2K7N A; 3RCI X; 1AWQ A; 1RMH A; 1AWV A; 4J5D X; 1YND A; 2OSE A; 1CWI A; 2POY A; 4S1J A; 4R3F A; 5KV0 A; 4DGA A; 5KUU A; 3PMP A; 5KV4 A; 2PLU A; 3OPF A; 3R49 A; 2ZP2 A; 3RDC A; 1CWO A; 4N1Q A; 5CCQ A; 4N1M A; 4IPZ A; 2NUL A; 1AWR A; 2OK3 A; 4ZSC A; 1VDN A; 5KUV A; 4I9Y A; 1W8L A; 2CMT A; 3R59 A; 4N1S A; 2X83 B; 3R54 A; 3K0Q A; 1QNG A; 1IIP A; 2WFJ A; 3R4G A; 2POE A; 5KV2 A; 2MVZ A; 4LQW A; 2WLW A; 1CWK A; 1M9E A; 2CFE A; 4YUL A; 1XO7 A; 1A33 A; 5KUO A; 1ZKC A; 3MML A; 2OJU A; 2ALF A; 1E8K A; 1AWU A; 3BT8 A; 4YUK A; 4N1R A; 1CWF A; 1V9T A; 2HQ6 A; 3O7T A; 4YUP A; 1CLH A; 3RCF A; 2NNZ A; 1FGL A; 1CWH A; 2Z6W A; 3BKP A; 1J2A A; 3MML B; 4DGD A; 5CBV A; 2BIU X; 2B71 A; 3EOV A; 3RCG A; 1OCA A; 1H0P A; 4YUI A; 4YUH A; 1W8M A; 1ZX8 A; 3RDD A; 3RDB A; 1W74 A; 4CYH A; 4YUG A; 1XQ7 A; 3RD9 X; 3R57 A; 3T1U A; 4N1N A; 4JJM A; 2CYH A; 3K0O A; 1CWJ A; 4E1Q A; 1CYN A; 5KUN A; 5KUS A; 5CYH A; 1IST A; 4N1O A; 2KA0 A; 1XYH A; 1Z81 A; 4DGE A; 1AWS A; 1BCK A; 1DYW A; 3ORE A; 1CWB A; 4J5C X; 1VBT A; 2ESL A; 5KUZ A; 3VA7 A; 3K2C A; 5KUQ A; 3BO7 A; 3X27 A; 4YUJ A; #chains in the Genus database with same CATH homology 1QNH A; 1W8V A; 5CCR A; 1MF8 C; 1XWN A; 4O8I A; 5CBU A; 4J5A X; 1MZW A; 2RMA A; 3RFY A; 2CPL A; 3K0P A; 3CYS A; 2MC9 A; 5LUD A; 2IGV A; 2RS4 A; 2XGY B; 3RCK X; 1E3B A; 2HE9 A; 3K0R A; 1AWT A; 5DUD A; 3RDA X; 5CBT A; 1M9D A; 3ICH A; 1M63 C; 1IHG A; 5KV5 A; 5A0E A; 2FU0 A; 3K0N A; 3OEP A; 2WFI A; 4S1E A; 4XNC A; 1A58 A; 4EYV A; 1QOI A; 1CWL A; 3R56 A; 2HAQ A; 4YUO A; 4YUM A; 3S6M A; 1C5F A; 2BIT X; 2X25 B; 1X7F A; 1M9X A; 1CWC A; 4ZSD A; 3UCH A; 1MIK A; 4R3E A; 4DGC A; 5KV6 A; 1M9C A; 2R99 A; 5KV7 A; 3JB9 d; 4O8H A; 5KUR A; 2A2N A; 2X2D B; 3ODI A; 2C3B A; 3ODL A; 1ZMF A; 1VBS A; 2IGW A; 4J59 A; 1LOP A; 2PHC B; 5CBW A; 5F66 A; 5CCN A; 1CWA A; 2X7K A; 4FRU A; 4HY7 A; 3ICI A; 2RMC A; 3QYU A; 1M9Y A; 1NMK A; 5KV3 A; 2HQJ A; 2RMB A; 2X2A A; 1AK4 A; 1ZKF A; 2N0T A; 2QER A; 4YUN A; 5KV1 A; 2P0O A; 3K0M A; 4J5B A; 2X2C K; 4DGB A; 4N1P A; 1CWM A; 5JHE A; 2MS4 A; 4JCP A; 5KUW A; 2CK1 A; 4FRV A; 4J5E X; 4J58 A; 1M9F A; 2MZU A; 3CYH A; 4TOT A; 1VAI A; 3RCL A; 5KUL A; 5CCS X; 2GW2 A; 2K7N A; 3RCI X; 1AWQ A; 1RMH A; 1AWV A; 4J5D X; 1YND A; 2OSE A; 1CWI A; 2POY A; 4S1J A; 4R3F A; 5KV0 A; 4DGA A; 5KUU A; 3PMP A; 5KV4 A; 2PLU A; 3OPF A; 3R49 A; 2ZP2 A; 3RDC A; 1CWO A; 4N1Q A; 5CCQ A; 4N1M A; 4IPZ A; 2NUL A; 1AWR A; 2OK3 A; 4ZSC A; 1VDN A; 5KUV A; 4I9Y A; 1W8L A; 2CMT A; 3R59 A; 4N1S A; 2X83 B; 3R54 A; 3K0Q A; 1QNG A; 1IIP A; 2WFJ A; 3R4G A; 2POE A; 5KV2 A; 2MVZ A; 4LQW A; 2WLW A; 1CWK A; 1M9E A; 2CFE A; 4YUL A; 1XO7 A; 1A33 A; 5KUO A; 1ZKC A; 3MML A; 2OJU A; 2ALF A; 1E8K A; 1AWU A; 3BT8 A; 4YUK A; 4N1R A; 1CWF A; 1V9T A; 2HQ6 A; 3O7T A; 4YUP A; 1CLH A; 3RCF A; 4DGD A; 1FGL A; 1CWH A; 2Z6W A; 3BKP A; 1J2A A; 3MML B; 5CBV A; 2BIU X; 2B71 A; 3EOV A; 3RCG A; 1OCA A; 1H0P A; 4YUI A; 4YUH A; 1W8M A; 3RDD A; 3RDB A; 1W74 A; 4CYH A; 4YUG A; 1XQ7 A; 3RD9 X; 3R57 A; 3T1U A; 4N1N A; 4JJM A; 2CYH A; 3K0O A; 1CWJ A; 4E1Q A; 1CYN A; 5KUN A; 5KUS A; 5CYH A; 1IST A; 4N1O A; 1XYH A; 1Z81 A; 4DGE A; 1AWS A; 1BCK A; 1DYW A; 3ORE A; 1CWB A; 4J5C X; 1VBT A; 2ESL A; 5KUZ A; 3VA7 A; 3K2C A; 5KUQ A; 3BO7 A; 4YUJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
