4RTHA

The crystal structure of psbp from zea mays
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
172
structure length
167
Chain Sequence
NTDFISYVGDGFKLLIPSKWNPSKEREFPGQVLRYEDNFDANSNVSVIIQPTSKKAITEYGSPEEFLSQVDYLLGKQAYGGKTDETDAVATANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQLITATVSDGKLYICKAQAGDKRWFKGARKGVEKAAASFSVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure Analysis of Extrinsic PsbP Protein of Photosystem II Reveals a Manganese-Induced Conformational Change
pubmed doi rcsb
molecule tags Photosynthesis
molecule keywords Membrane-extrinsic protein of photosystem II PsbP
total genus 43
structure length 167
sequence length 172
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-15
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 4rthA00
4UI2D 3LYDA 4RTIA 1V2BA 1TU1A 3JCUP 3HLZA 4RTHA 4BQ8C 2VU4A 1JHSA 4BQ6D 3V7BA 1EQ6A 2LNJA 2XB3A
chains in the Genus database with same CATH superfamily
1V2BA 3HLZA 3V7BA 2LNJA 3NR5A 2XB3A 3BCYA 4N7SB 1TU1A 4RTHA 1JHSA 4OUHA 3LYDA 4ESQA 4RTIA 4M5FB 3JCUP 2VT8A 4BQ6D 4N80B 4LUQC 1EQ6A 4N88B 4UI2D 4L9CA 4L9HA 4BQ8C 1VR8A 3WA5B 2VU4A
chains in the Genus database with same CATH topology
4UI2D 3LYDA 4RTIA 1V2BA 1TU1A 3JCUP 3HLZA 4RTHA 4BQ8C 2VU4A 1JHSA 4BQ6D 3V7BA 1EQ6A 2LNJA 2XB3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UI2 D;  3LYD A;  4RTI A;  1V2B A;  1TU1 A;  3JCU P;  3HLZ A;  4RTH A;  4BQ8 C;  2VU4 A;  1JHS A;  4BQ6 D;  3V7B A;  1EQ6 A;  2LNJ A;  2XB3 A; 
#chains in the Genus database with same CATH topology
 1V2B A;  3HLZ A;  3V7B A;  2LNJ A;  3NR5 A;  2XB3 A;  3BCY A;  4N7S B;  1TU1 A;  4RTH A;  1JHS A;  4OUH A;  3LYD A;  4ESQ A;  4RTI A;  4M5F B;  3JCU P;  2VT8 A;  4BQ6 D;  4N80 B;  4LUQ C;  1EQ6 A;  4N88 B;  4UI2 D;  4L9C A;  4L9H A;  4BQ8 C;  1VR8 A;  3WA5 B;  2VU4 A; 
#chains in the Genus database with same CATH homology
 4UI2 D;  3LYD A;  4RTI A;  1V2B A;  1TU1 A;  3JCU P;  3HLZ A;  4RTH A;  4BQ8 C;  2VU4 A;  1JHS A;  4BQ6 D;  3V7B A;  1EQ6 A;  2LNJ A;  2XB3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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