4RTIA

The crystal structure of psbp from spinacia oleracea
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
175
structure length
175
Chain Sequence
PKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure Analysis of Extrinsic PsbP Protein of Photosystem II Reveals a Manganese-Induced Conformational Change
pubmed doi rcsb
molecule tags Photosynthesis
molecule keywords Oxygen-evolving enhancer protein 2, chloroplastic
total genus 46
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2014-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01789 PsbP PsbP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1000.10 Alpha Beta 3-Layer(aba) Sandwich Protein Transport Mog1p; Chain A Mog1/PsbP, alpha/beta/alpha sandwich 4rtiA00
2VU4A 2LNJA 1V2BA 4BQ6D 3LYDA 4RTHA 1EQ6A 3HLZA 3JCUP 1TU1A 4BQ8C 4UI2D 3V7BA 1JHSA 4RTIA 2XB3A
chains in the Genus database with same CATH superfamily
4M5FB 1V2BA 4ESQA 4L9CA 3NR5A 3V7BA 4N7SB 2XB3A 4N88B 4OUHA 4RTHA 1EQ6A 3JCUP 4LUQC 3WA5B 4L9HA 3BCYA 1JHSA 1VR8A 2VU4A 3LYDA 4BQ8C 3HLZA 1TU1A 4RTIA 4N80B 2LNJA 4BQ6D 2VT8A 4UI2D
chains in the Genus database with same CATH topology
2VU4A 2LNJA 1V2BA 4BQ6D 3LYDA 4RTHA 1EQ6A 3HLZA 3JCUP 1TU1A 4BQ8C 4UI2D 3V7BA 1JHSA 4RTIA 2XB3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VU4 A;  2LNJ A;  1V2B A;  4BQ6 D;  3LYD A;  4RTH A;  1EQ6 A;  3HLZ A;  3JCU P;  1TU1 A;  4BQ8 C;  4UI2 D;  3V7B A;  1JHS A;  4RTI A;  2XB3 A; 
#chains in the Genus database with same CATH topology
 4M5F B;  1V2B A;  4ESQ A;  4L9C A;  3NR5 A;  3V7B A;  4N7S B;  2XB3 A;  4N88 B;  4OUH A;  4RTH A;  1EQ6 A;  3JCU P;  4LUQ C;  3WA5 B;  4L9H A;  3BCY A;  1JHS A;  1VR8 A;  2VU4 A;  3LYD A;  4BQ8 C;  3HLZ A;  1TU1 A;  4RTI A;  4N80 B;  2LNJ A;  4BQ6 D;  2VT8 A;  4UI2 D; 
#chains in the Genus database with same CATH homology
 2VU4 A;  2LNJ A;  1V2B A;  4BQ6 D;  3LYD A;  4RTH A;  1EQ6 A;  3HLZ A;  3JCU P;  1TU1 A;  4BQ8 C;  4UI2 D;  3V7B A;  1JHS A;  4RTI A;  2XB3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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