4UYP | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	73
structure length	73
Chain Sequence	KFIYGDVDGNGSVRSIDAVLIRDYVLGKINEFPYEYGMLAADVDGNGSIKINDAVLVRDYVLGKIFLFPVEEK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 73 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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73 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell adhesion/protein binding
source organism	Acetivibrio cellulolyticus
publication title	Cell-surface Attachment of Bacterial Multienzyme Complexes Involves Highly Dynamic Protein-Protein Anchors. pubmed doi rcsb
molecule keywords	Cellulosomal scaffoldin anchoring protein C
total genus	22
structure length	73
sequence length	73
chains with identical sequence	D
ec nomenclature
pdb deposition date	2014-09-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00404	Dockerin_1	Dockerin type I domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1330.10	Mainly Alpha	Orthogonal Bundle	Type 1 dockerin domain	Dockerin domain	4uypB00

4FL4C 4DH2B 1DAQA 4UYPB 4WI0B 5G5DB 2VN5B 2VN6B 2B59B 4IU2B 5K39B 2MTEA 3UL4B 2CCLB 4IU3B 5LXVB 4WKZA 1OHZB 3KCPA 2OZNB 4U3SB 2JNKA 4UYQB 1DAVA 2Y3NB 4FL4A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4FL4 C;  4DH2 B;  1DAQ A;  4UYP B;  4WI0 B;  5G5D B;  2VN5 B;  2VN6 B;  2B59 B;  4IU2 B;  5K39 B;  2MTE A;  3UL4 B;  2CCL B;  4IU3 B;  5LXV B;  4WKZ A;  1OHZ B;  3KCP A;  2OZN B;  4U3S B;  2JNK A;  4UYQ B;  1DAV A;  2Y3N B;  4FL4 A; 
#chains in the Genus database with same CATH topology
 4FL4 C;  4DH2 B;  1DAQ A;  4UYP B;  4WI0 B;  5G5D B;  2VN5 B;  2VN6 B;  2B59 B;  4IU2 B;  5K39 B;  2MTE A;  3UL4 B;  2CCL B;  4IU3 B;  5LXV B;  4WKZ A;  1OHZ B;  3KCP A;  2OZN B;  4U3S B;  2JNK A;  4UYQ B;  1DAV A;  2Y3N B;  4FL4 A; 
#chains in the Genus database with same CATH homology
 4FL4 C;  4DH2 B;  1DAQ A;  4UYP B;  4WI0 B;  5G5D B;  2VN5 B;  2VN6 B;  2B59 B;  4IU2 B;  5K39 B;  2MTE A;  3UL4 B;  2CCL B;  4IU3 B;  5LXV B;  4WKZ A;  1OHZ B;  3KCP A;  2OZN B;  4U3S B;  2JNK A;  4UYQ B;  1DAV A;  2Y3N B;  4FL4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4UYPB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations