4UYQB

High resolution structure of the third cohesin scac in complex with the scab dockerin with a mutation in the c-terminal helix (in to si) from acetivibrio cellulolyticus displaying a type i interaction.
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
73
structure length
73
Chain Sequence
KFIYGDVDGNGSVRINDAVLIRDYVLGKINEFPYEYGMLAADVDGNGSIKSIDAVLVRDYVLGKIFLFPVEEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
TII1 (3-6)AH2 (36-41)EMPTYTI1 (6-9)AH1 (15-26)TI2 (42-45)3H1 (69-71)AH3 (51-62)TVIII1 (27-30)Updating...
connected with : NaN
molecule tags Cell adhesion/protein binding
source organism Acetivibrio cellulolyticus
publication title Cell-surface Attachment of Bacterial Multienzyme Complexes Involves Highly Dynamic Protein-Protein Anchors.
pubmed doi rcsb
molecule keywords Cellulosomal scaffoldin anchoring protein C
total genus 17
structure length 73
sequence length 73
ec nomenclature
pdb deposition date 2014-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00404 Dockerin_1 Dockerin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1330.10 Mainly Alpha Orthogonal Bundle Type 1 dockerin domain Dockerin domain 4uyqB00
2MTEA 4UYQB 5K39B 2JNKA 3UL4B 4FL4A 1OHZB 2Y3NB 4IU3B 2VN6B 4DH2B 5G5DB 2B59B 5LXVB 4FL4C 4WKZA 3KCPA 4IU2B 1DAVA 2CCLB 4WI0B 4UYPB 2OZNB 4U3SB 1DAQA 2VN5B
chains in the Genus database with same CATH superfamily
2MTEA 4UYQB 5K39B 2JNKA 3UL4B 4FL4A 1OHZB 2Y3NB 4IU3B 2VN6B 4DH2B 5G5DB 2B59B 5LXVB 4FL4C 4WKZA 3KCPA 4IU2B 1DAVA 2CCLB 4WI0B 4UYPB 2OZNB 4U3SB 1DAQA 2VN5B
chains in the Genus database with same CATH topology
2MTEA 4UYQB 5K39B 2JNKA 3UL4B 4FL4A 1OHZB 2Y3NB 4IU3B 2VN6B 4DH2B 5G5DB 2B59B 5LXVB 4FL4C 4WKZA 3KCPA 4IU2B 1DAVA 2CCLB 4WI0B 4UYPB 2OZNB 4U3SB 1DAQA 2VN5B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2MTE A;  4UYQ B;  5K39 B;  2JNK A;  3UL4 B;  4FL4 A;  1OHZ B;  2Y3N B;  4IU3 B;  2VN6 B;  4DH2 B;  5G5D B;  2B59 B;  5LXV B;  4FL4 C;  4WKZ A;  3KCP A;  4IU2 B;  1DAV A;  2CCL B;  4WI0 B;  4UYP B;  2OZN B;  4U3S B;  1DAQ A;  2VN5 B; 
#chains in the Genus database with same CATH topology
 2MTE A;  4UYQ B;  5K39 B;  2JNK A;  3UL4 B;  4FL4 A;  1OHZ B;  2Y3N B;  4IU3 B;  2VN6 B;  4DH2 B;  5G5D B;  2B59 B;  5LXV B;  4FL4 C;  4WKZ A;  3KCP A;  4IU2 B;  1DAV A;  2CCL B;  4WI0 B;  4UYP B;  2OZN B;  4U3S B;  1DAQ A;  2VN5 B; 
#chains in the Genus database with same CATH homology
 2MTE A;  4UYQ B;  5K39 B;  2JNK A;  3UL4 B;  4FL4 A;  1OHZ B;  2Y3N B;  4IU3 B;  2VN6 B;  4DH2 B;  5G5D B;  2B59 B;  5LXV B;  4FL4 C;  4WKZ A;  3KCP A;  4IU2 B;  1DAV A;  2CCL B;  4WI0 B;  4UYP B;  2OZN B;  4U3S B;  1DAQ A;  2VN5 B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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