The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
67
|
structure length |
67
|
Chain Sequence |
RHNLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVPRVG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Stabilization of Enzymes by Metal Binding: Structures of Two Alkalophilic Bacillus Subtilases and Analysis of the Second Metal-Binding Site of the Subtilase Family
doi rcsb |
| molecule keywords |
Enzyme subtilase SubHal from Bacillus halmapalus
|
| molecule tags |
Hydrolase
|
| source organism |
Bacillus halmapalus
|
| total genus |
17
|
| structure length |
67
|
| sequence length |
67
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2015-12-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00280 | potato_inhibit | Potato inhibitor I family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Trypsin Inhibitor V; Chain A | Trypsin Inhibitor V, subunit A |
#chains in the Genus database with same CATH superfamily 1TMG I; 4B2A B; 4B1T B; 4B2B B; 3RDY A; 1Y3B I; 1Y4D I; 1Y3C I; 1TO1 I; 3CI2 A; 1DWM A; 5FBZ B; 1LW6 I; 1TM3 I; 1SIB I; 1ACB I; 1TEC I; 2TEC I; 4B2C B; 1TM1 I; 2CI2 I; 1Y48 I; 1TIN A; 1Y34 I; 1YPC I; 1SBN I; 1MIT A; 1VBW A; 3W0D A; 3W0E A; 5FFN I; 2SNI I; 1YPA I; 1Y4A I; 1YPB I; 1CIS A; 1HYM A; 1TM5 I; 1MEE I; 4H4F B; 2SEC I; 1COA I; 1TM7 I; 1Y33 I; 1CSE I; 3RDZ C; 1Y3D I; 1TM4 I; 1Y1K I; 1TO2 I; 1EGL A; 1Y3F I; 3TEC I; #chains in the Genus database with same CATH topology 1TMG I; 4B2A B; 4B1T B; 4B2B B; 3RDY A; 1Y3B I; 1Y4D I; 2KUI A; 1Y3C I; 1TO1 I; 3CI2 A; 1DWM A; 1EGL A; 5FBZ B; 1LW6 I; 1TM3 I; 1SIB I; 3TEC I; 1ACB I; 1TEC I; 2TEC I; 4B2C B; 1TM1 I; 2MGV A; 2CI2 I; 1Y48 I; 1TIN A; 1Y34 I; 3OUV A; 1YPC I; 1SBN I; 1MIT A; 1VBW A; 3W0D A; 3W0E A; 3M9G A; 5FFN I; 2SNI I; 1YPA I; 1Y4A I; 1YPB I; 1CIS A; 1HYM A; 2KUE A; 1TM5 I; 1MEE I; 4H4F B; 2SEC I; 1COA I; 1TM7 I; 1Y33 I; 5E10 A; 1CSE I; 3RDZ C; 3PY9 A; 1Y3D I; 1TM4 I; 1Y1K I; 1TO2 I; 2KUD A; 5E0Z A; 1Y3F I; 5E0Y A; 2KUF A; #chains in the Genus database with same CATH homology 1TMG I; 4B2A B; 4B1T B; 4B2B B; 3RDY A; 1Y3B I; 1Y4D I; 1Y3C I; 1TO1 I; 3CI2 A; 1DWM A; 5FBZ B; 1LW6 I; 1TM3 I; 1SIB I; 1ACB I; 1TEC I; 2TEC I; 4B2C B; 1TM1 I; 2CI2 I; 1Y48 I; 1TIN A; 1Y34 I; 1YPC I; 1SBN I; 1MIT A; 1VBW A; 3W0D A; 3W0E A; 5FFN I; 2SNI I; 1YPA I; 1Y4A I; 1YPB I; 1CIS A; 1HYM A; 1TM5 I; 1MEE I; 4H4F B; 2SEC I; 1COA I; 1TM7 I; 1Y33 I; 1CSE I; 3RDZ C; 1Y3D I; 1TM4 I; 1Y1K I; 1TO2 I; 1EGL A; 1Y3F I; 3TEC I;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
