5LXVB

Crystal structure of ruminococcus flavefaciens scaffoldin c cohesin in complex with a dockerin from an uncharacterized cbm-containing protein
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
65
structure length
65
Chain Sequence
VYGDLDGDGEVDVFDLILMRKAVENGDTERFEAADLNCDGVIDSDDLTYHSEYLHGIRKTLPVEY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Protein binding
source organism Ruminococcus flavefaciens fd-1
publication title Single Binding Mode Integration of Hemicellulose-degrading Enzymes via Adaptor Scaffoldins in Ruminococcus flavefaciens Cellulosome.
pubmed doi rcsb
molecule keywords Scaffoldin C
total genus 22
structure length 65
sequence length 65
chains with identical sequence D
ec nomenclature
pdb deposition date 2016-09-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1330.10 Mainly Alpha Orthogonal Bundle Type 1 dockerin domain Dockerin domain 5lxvB00
2VN5B 2MTEA 2OZNB 4FL4C 3KCPA 2JNKA 4U3SB 5K39B 2VN6B 4DH2B 4IU3B 4IU2B 1DAQA 4UYQB 1OHZB 2Y3NB 2CCLB 4WI0B 3UL4B 4FL4A 4WKZA 4UYPB 2B59B 5LXVB 1DAVA 5G5DB
chains in the Genus database with same CATH superfamily
2VN5B 2MTEA 2OZNB 4FL4C 3KCPA 2JNKA 4U3SB 5K39B 2VN6B 4DH2B 4IU3B 4IU2B 1DAQA 4UYQB 1OHZB 2Y3NB 2CCLB 4WI0B 3UL4B 4FL4A 4WKZA 4UYPB 2B59B 5LXVB 1DAVA 5G5DB
chains in the Genus database with same CATH topology
2VN5B 2MTEA 2OZNB 4FL4C 3KCPA 2JNKA 4U3SB 5K39B 2VN6B 4DH2B 4IU3B 4IU2B 1DAQA 4UYQB 1OHZB 2Y3NB 2CCLB 4WI0B 3UL4B 4FL4A 4WKZA 4UYPB 2B59B 5LXVB 1DAVA 5G5DB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2VN5 B;  2MTE A;  2OZN B;  4FL4 C;  3KCP A;  2JNK A;  4U3S B;  5K39 B;  2VN6 B;  4DH2 B;  4IU3 B;  4IU2 B;  1DAQ A;  4UYQ B;  1OHZ B;  2Y3N B;  2CCL B;  4WI0 B;  3UL4 B;  4FL4 A;  4WKZ A;  4UYP B;  2B59 B;  5LXV B;  1DAV A;  5G5D B; 
#chains in the Genus database with same CATH topology
 2VN5 B;  2MTE A;  2OZN B;  4FL4 C;  3KCP A;  2JNK A;  4U3S B;  5K39 B;  2VN6 B;  4DH2 B;  4IU3 B;  4IU2 B;  1DAQ A;  4UYQ B;  1OHZ B;  2Y3N B;  2CCL B;  4WI0 B;  3UL4 B;  4FL4 A;  4WKZ A;  4UYP B;  2B59 B;  5LXV B;  1DAV A;  5G5D B; 
#chains in the Genus database with same CATH homology
 2VN5 B;  2MTE A;  2OZN B;  4FL4 C;  3KCP A;  2JNK A;  4U3S B;  5K39 B;  2VN6 B;  4DH2 B;  4IU3 B;  4IU2 B;  1DAQ A;  4UYQ B;  1OHZ B;  2Y3N B;  2CCL B;  4WI0 B;  3UL4 B;  4FL4 A;  4WKZ A;  4UYP B;  2B59 B;  5LXV B;  1DAV A;  5G5D B;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.