1AM2 | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	199
structure length	181
Chain Sequence	ASITGDALVALPEGESVRIADIVPGARPNSDNAIDLKVLDRHGNPVLADRLFHSGEHPVYAVRTVEGLRVTGTANHPLLCLVDVAGVPTLLWKLIDEIKPGDYAVIQRSAFSTVGVPGLVRFLEAHHRDPDAKAIADELTDGRFYYAKVASVTDAGVQPVYSLRVDTADHAFITNGFVSHN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 181 atoms

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181 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Intein
source organism	Mycobacterium xenopi
publication title	Crystal structure of GyrA intein from Mycobacterium xenopi reveals structural basis of protein splicing. pubmed doi rcsb
molecule keywords	MXE GYRA INTEIN
total genus	46
structure length	181
sequence length	199
ec nomenclature
pdb deposition date	1997-06-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14890	Intein_splicing	Intein splicing domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	1am2A00

1GPPA 4OZ6A 2IN8A 1VDEA 5I0AA 1LWTA 1ZD7A 2IN0A 2L8LA 2LWYA 4E2TA 1LWSA 1AM2A 2CW8A 2CW7A 4O1SA 1UM2A 2IMZA 4GIGA 2JMZA 1DQ3A 3NZMA 1EF0A 1ZDEA 1DFAA 2LCJA 4KL5A 2IN9A 3IFJA 4KL6A 1MI8A 1AT0A 2JNQA 4O1RA 5K08A 2LQMA 1JVAA 3IGDA 4E2UA 2KEQA
chains in the Genus database with same CATH superfamily

1GPPA 4OZ6A 2IN8A 1VDEA 5I0AA 1LWTA 1ZD7A 2IN0A 2L8LA 2LWYA 4E2TA 1LWSA 1AM2A 2CW8A 2CW7A 4O1SA 1UM2A 2IMZA 4GIGA 2JMZA 1DQ3A 3NZMA 1EF0A 1ZDEA 4QFQA 1DFAA 2LCJA 4KL5A 2IN9A 3IFJA 4KL6A 1MI8A 1AT0A 2JNQA 4O1RA 4LX3A 5K08A 2LQMA 1JVAA 3IGDA 4E2UA 2KEQA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1GPP A;  4OZ6 A;  2IN8 A;  1VDE A;  5I0A A;  1LWT A;  1ZD7 A;  2IN0 A;  2L8L A;  2LWY A;  4E2T A;  1LWS A;  1AM2 A;  2CW8 A;  2CW7 A;  4O1S A;  1UM2 A;  2IMZ A;  4GIG A;  2JMZ A;  1DQ3 A;  3NZM A;  1EF0 A;  1ZDE A;  1DFA A;  2LCJ A;  4KL5 A;  2IN9 A;  3IFJ A;  4KL6 A;  1MI8 A;  1AT0 A;  2JNQ A;  4O1R A;  5K08 A;  2LQM A;  1JVA A;  3IGD A;  4E2U A;  2KEQ A; 
#chains in the Genus database with same CATH topology
 1GPP A;  4OZ6 A;  2IN8 A;  1VDE A;  5I0A A;  1LWT A;  1ZD7 A;  2IN0 A;  2L8L A;  2LWY A;  4E2T A;  1LWS A;  1AM2 A;  2CW8 A;  2CW7 A;  4O1S A;  1UM2 A;  2IMZ A;  4GIG A;  2JMZ A;  1DQ3 A;  3NZM A;  1EF0 A;  1ZDE A;  4QFQ A;  1DFA A;  2LCJ A;  4KL5 A;  2IN9 A;  3IFJ A;  4KL6 A;  1MI8 A;  1AT0 A;  2JNQ A;  4O1R A;  4LX3 A;  5K08 A;  2LQM A;  1JVA A;  3IGD A;  4E2U A;  2KEQ A; 
#chains in the Genus database with same CATH homology
 1GPP A;  4OZ6 A;  2IN8 A;  1VDE A;  5I0A A;  1LWT A;  1ZD7 A;  2IN0 A;  2L8L A;  2LWY A;  4E2T A;  1LWS A;  1AM2 A;  2CW8 A;  2CW7 A;  4O1S A;  1UM2 A;  2IMZ A;  4GIG A;  2JMZ A;  1DQ3 A;  3NZM A;  1EF0 A;  1ZDE A;  1DFA A;  2LCJ A;  4KL5 A;  2IN9 A;  3IFJ A;  4KL6 A;  1MI8 A;  1AT0 A;  2JNQ A;  4O1R A;  5K08 A;  2LQM A;  1JVA A;  3IGD A;  4E2U A;  2KEQ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AM2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations