1AT0 | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	145
structure length	145
Chain Sequence	CFTPESTALLESGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPESQKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAASCYA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 145 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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145 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Signaling protein
source organism	Drosophila melanogaster
publication title	Crystal structure of a Hedgehog autoprocessing domain: homology between Hedgehog and self-splicing proteins. pubmed doi rcsb
molecule keywords	17-HEDGEHOG
total genus	29
structure length	145
sequence length	145
ec nomenclature
pdb deposition date	1997-08-15

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	1at0A00

2IMZA 1AM2A 1VDEA 4GIGA 4OZ6A 2IN9A 2LCJA 5K08A 2IN0A 1DQ3A 4KL5A 1EF0A 2CW8A 2CW7A 4O1RA 2JNQA 1MI8A 2LWYA 5I0AA 2LQMA 2IN8A 2L8LA 4O1SA 3NZMA 2JMZA 1ZD7A 3IGDA 4E2UA 1AT0A 1UM2A 2KEQA 1ZDEA 3IFJA 1GPPA 1JVAA 1LWTA 1DFAA 1LWSA 4KL6A 4E2TA
chains in the Genus database with same CATH superfamily

2IMZA 1AM2A 1VDEA 4GIGA 4OZ6A 2IN9A 2LCJA 5K08A 2IN0A 4LX3A 1DQ3A 4KL5A 1EF0A 2CW8A 2CW7A 4O1RA 2JNQA 1MI8A 2LWYA 5I0AA 2LQMA 2IN8A 2L8LA 4O1SA 3NZMA 2JMZA 1ZD7A 3IGDA 4E2UA 4QFQA 1AT0A 1UM2A 2KEQA 1ZDEA 3IFJA 1GPPA 1JVAA 1LWTA 1DFAA 1LWSA 4KL6A 4E2TA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2IMZ A;  1AM2 A;  1VDE A;  4GIG A;  4OZ6 A;  2IN9 A;  2LCJ A;  5K08 A;  2IN0 A;  1DQ3 A;  4KL5 A;  1EF0 A;  2CW8 A;  2CW7 A;  4O1R A;  2JNQ A;  1MI8 A;  2LWY A;  5I0A A;  2LQM A;  2IN8 A;  2L8L A;  4O1S A;  3NZM A;  2JMZ A;  1ZD7 A;  3IGD A;  4E2U A;  1AT0 A;  1UM2 A;  2KEQ A;  1ZDE A;  3IFJ A;  1GPP A;  1JVA A;  1LWT A;  1DFA A;  1LWS A;  4KL6 A;  4E2T A; 
#chains in the Genus database with same CATH topology
 2IMZ A;  1AM2 A;  1VDE A;  4GIG A;  4OZ6 A;  2IN9 A;  2LCJ A;  5K08 A;  2IN0 A;  4LX3 A;  1DQ3 A;  4KL5 A;  1EF0 A;  2CW8 A;  2CW7 A;  4O1R A;  2JNQ A;  1MI8 A;  2LWY A;  5I0A A;  2LQM A;  2IN8 A;  2L8L A;  4O1S A;  3NZM A;  2JMZ A;  1ZD7 A;  3IGD A;  4E2U A;  4QFQ A;  1AT0 A;  1UM2 A;  2KEQ A;  1ZDE A;  3IFJ A;  1GPP A;  1JVA A;  1LWT A;  1DFA A;  1LWS A;  4KL6 A;  4E2T A; 
#chains in the Genus database with same CATH homology
 2IMZ A;  1AM2 A;  1VDE A;  4GIG A;  4OZ6 A;  2IN9 A;  2LCJ A;  5K08 A;  2IN0 A;  1DQ3 A;  4KL5 A;  1EF0 A;  2CW8 A;  2CW7 A;  4O1R A;  2JNQ A;  1MI8 A;  2LWY A;  5I0A A;  2LQM A;  2IN8 A;  2L8L A;  4O1S A;  3NZM A;  2JMZ A;  1ZD7 A;  3IGD A;  4E2U A;  1AT0 A;  1UM2 A;  2KEQ A;  1ZDE A;  3IFJ A;  1GPP A;  1JVA A;  1LWT A;  1DFA A;  1LWS A;  4KL6 A;  4E2T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AT0A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization