1DHNA

1.65 angstrom resolution structure of 7,8-dihydroneopterin aldolase from staphylococcus aureus
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
121
structure length
121
Chain Sequence
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure and reaction mechanism of 7,8-dihydroneopterin aldolase from Staphylococcus aureus.
pubmed doi rcsb
molecule tags Pterin binding
source organism Staphylococcus aureus
molecule keywords 7,8-DIHYDRONEOPTERIN ALDOLASE
total genus 35
structure length 121
sequence length 121
ec nomenclature ec 4.1.2.25: Dihydroneopterin aldolase.
pdb deposition date 1998-03-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02152 FolB Dihydroneopterin aldolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 1dhnA00
4UQFA 4DU6A 4GHMA 1IS8A 4AEYA 3RJ4A 1NBUB 3UXVA 1IS7A 1RRIA 1RSDA 1RSIA 1DHNA 2NM3A 1U68A 1FBXA 1NBUA 5F3MA 1RS4A 1RRYA 1WM9A 3V9OA 1N3RA 1WUQA 3RZPA 1A9CA 2O90A 1Z9WA 1NBUC 3S19A 3O1KA 5FARA 1RS2A 1WURA 2NM2A 3R2EA 4FGCA 1N3SA 1RRWA 1SQLA 2DHNA 4IQIA 3UXJA 1A8RA 1WPLA 3BP1A 1GTPA 1N3TA 4F8BA 2CG8A 1B9LA 1FB1A
chains in the Genus database with same CATH superfamily
4UQFA 4DU6A 4GHMA 1IS8A 4AEYA 3RJ4A 1NBUB 3UXVA 1IS7A 1RRIA 1RSDA 1RSIA 1DHNA 2NM3A 1U68A 1FBXA 1NBUA 5F3MA 1RS4A 1RRYA 1WM9A 3V9OA 1N3RA 1WUQA 3RZPA 1A9CA 2O90A 1Z9WA 1NBUC 3S19A 3O1KA 5FARA 1RS2A 1WURA 2NM2A 3R2EA 4FGCA 1N3SA 1RRWA 1SQLA 2DHNA 4IQIA 3UXJA 1A8RA 1WPLA 3BP1A 1GTPA 1N3TA 4F8BA 2CG8A 1B9LA 1FB1A
chains in the Genus database with same CATH topology
4UQFA 4DU6A 4GHMA 1IS8A 4AEYA 3RJ4A 1NBUB 3UXVA 1IS7A 1RRIA 1RSDA 1RSIA 1DHNA 2NM3A 1U68A 1FBXA 1NBUA 5F3MA 1RS4A 1RRYA 1WM9A 3V9OA 1N3RA 1WUQA 3RZPA 1A9CA 2O90A 1Z9WA 1NBUC 3S19A 3O1KA 5FARA 1RS2A 1WURA 2NM2A 3R2EA 4FGCA 1N3SA 1RRWA 1SQLA 2DHNA 4IQIA 3UXJA 1A8RA 1WPLA 3BP1A 1GTPA 1N3TA 4F8BA 2CG8A 1B9LA 1FB1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UQF A;  4DU6 A;  4GHM A;  1IS8 A;  4AEY A;  3RJ4 A;  1NBU B;  3UXV A;  1IS7 A;  1RRI A;  1RSD A;  1RSI A;  1DHN A;  2NM3 A;  1U68 A;  1FBX A;  1NBU A;  5F3M A;  1RS4 A;  1RRY A;  1WM9 A;  3V9O A;  1N3R A;  1WUQ A;  3RZP A;  1A9C A;  2O90 A;  1Z9W A;  1NBU C;  3S19 A;  3O1K A;  5FAR A;  1RS2 A;  1WUR A;  2NM2 A;  3R2E A;  4FGC A;  1N3S A;  1RRW A;  1SQL A;  2DHN A;  4IQI A;  3UXJ A;  1A8R A;  1WPL A;  3BP1 A;  1GTP A;  1N3T A;  4F8B A;  2CG8 A;  1B9L A;  1FB1 A; 
#chains in the Genus database with same CATH topology
 4UQF A;  4DU6 A;  4GHM A;  1IS8 A;  4AEY A;  3RJ4 A;  1NBU B;  3UXV A;  1IS7 A;  1RRI A;  1RSD A;  1RSI A;  1DHN A;  2NM3 A;  1U68 A;  1FBX A;  1NBU A;  5F3M A;  1RS4 A;  1RRY A;  1WM9 A;  3V9O A;  1N3R A;  1WUQ A;  3RZP A;  1A9C A;  2O90 A;  1Z9W A;  1NBU C;  3S19 A;  3O1K A;  5FAR A;  1RS2 A;  1WUR A;  2NM2 A;  3R2E A;  4FGC A;  1N3S A;  1RRW A;  1SQL A;  2DHN A;  4IQI A;  3UXJ A;  1A8R A;  1WPL A;  3BP1 A;  1GTP A;  1N3T A;  4F8B A;  2CG8 A;  1B9L A;  1FB1 A; 
#chains in the Genus database with same CATH homology
 4UQF A;  4DU6 A;  4GHM A;  1IS8 A;  4AEY A;  3RJ4 A;  1NBU B;  3UXV A;  1IS7 A;  1RRI A;  1RSD A;  1RSI A;  1DHN A;  2NM3 A;  1U68 A;  1FBX A;  1NBU A;  5F3M A;  1RS4 A;  1RRY A;  1WM9 A;  3V9O A;  1N3R A;  1WUQ A;  3RZP A;  1A9C A;  2O90 A;  1Z9W A;  1NBU C;  3S19 A;  3O1K A;  5FAR A;  1RS2 A;  1WUR A;  2NM2 A;  3R2E A;  4FGC A;  1N3S A;  1RRW A;  1SQL A;  2DHN A;  4IQI A;  3UXJ A;  1A8R A;  1WPL A;  3BP1 A;  1GTP A;  1N3T A;  4F8B A;  2CG8 A;  1B9L A;  1FB1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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