The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
229
|
structure length |
217
|
Chain Sequence |
SACFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGSETMYSVVQKSMPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPVSEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPIGAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
High Resolution Crystal Structure of Domain I of the Saccharomyces Cerevisiae Homing Endonuclease Pi-Scei
pubmed doi rcsb |
| molecule tags |
Endonuclease
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
ENDONUCLEASE PI-SCEI
|
| total genus |
50
|
| structure length |
217
|
| sequence length |
229
|
| ec nomenclature |
ec
7.1.2.2: H(+)-transporting two-sector ATPase. |
| pdb deposition date | 2001-11-07 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Endonuclease - Pi-scei; Chain A, domain 1 | Hedgehog/Intein (Hint) domain |
#chains in the Genus database with same CATH superfamily 1GPP A; 1AM2 A; 1DFA A; 2LCJ A; 4O1R A; 1MI8 A; 1EF0 A; 2LWY A; 2IN9 A; 2LQM A; 5I0A A; 1LWS A; 3IFJ A; 4O1S A; 4E2U A; 1ZD7 A; 2CW7 A; 4E2T A; 2L8L A; 2IN0 A; 1AT0 A; 1JVA A; 1VDE A; 3IGD A; 1UM2 A; 1DQ3 A; 2CW8 A; 4OZ6 A; 2IN8 A; 4KL6 A; 3NZM A; 2IMZ A; 1ZDE A; 2JMZ A; 4GIG A; 2JNQ A; 1LWT A; 5K08 A; 4KL5 A; 2KEQ A; #chains in the Genus database with same CATH topology 1GPP A; 1AM2 A; 1DFA A; 2LCJ A; 4O1R A; 1MI8 A; 1EF0 A; 2LWY A; 2IN9 A; 2LQM A; 5I0A A; 1LWS A; 3IFJ A; 4O1S A; 4E2U A; 1ZD7 A; 2CW7 A; 4E2T A; 2L8L A; 2IN0 A; 1AT0 A; 1JVA A; 1VDE A; 3IGD A; 1UM2 A; 1DQ3 A; 2CW8 A; 4OZ6 A; 2IN8 A; 4KL6 A; 4QFQ A; 3NZM A; 2IMZ A; 1ZDE A; 4LX3 A; 2JMZ A; 4GIG A; 2JNQ A; 1LWT A; 5K08 A; 4KL5 A; 2KEQ A; #chains in the Genus database with same CATH homology 1GPP A; 1AM2 A; 1DFA A; 2LCJ A; 4O1R A; 1MI8 A; 1EF0 A; 2LWY A; 2IN9 A; 2LQM A; 5I0A A; 1LWS A; 3IFJ A; 4O1S A; 4E2U A; 1ZD7 A; 2CW7 A; 4E2T A; 2L8L A; 2IN0 A; 1AT0 A; 1JVA A; 1VDE A; 3IGD A; 1UM2 A; 1DQ3 A; 2CW8 A; 4OZ6 A; 2IN8 A; 4KL6 A; 3NZM A; 2IMZ A; 1ZDE A; 2JMZ A; 4GIG A; 2JNQ A; 1LWT A; 5K08 A; 4KL5 A; 2KEQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
