1GPPA

Crystal structure of the s.cerevisiae homing endonuclease pi-scei domain i
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
229
structure length
217
Chain Sequence
SACFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGSETMYSVVQKSMPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPVSEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPIGAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title High Resolution Crystal Structure of Domain I of the Saccharomyces Cerevisiae Homing Endonuclease Pi-Scei
pubmed doi rcsb
molecule tags Endonuclease
source organism Saccharomyces cerevisiae
molecule keywords ENDONUCLEASE PI-SCEI
total genus 50
structure length 217
sequence length 229
ec nomenclature ec 7.1.2.2: H(+)-transporting two-sector ATPase.
pdb deposition date 2001-11-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 1gppA00
2IN9A 4OZ6A 5K08A 2LCJA 4E2TA 2CW8A 1LWSA 1MI8A 2IMZA 4O1RA 2IN8A 1VDEA 2LQMA 1DQ3A 2KEQA 1DFAA 3IFJA 1AM2A 2IN0A 1LWTA 5I0AA 4GIGA 3IGDA 4O1SA 1ZD7A 1ZDEA 4KL5A 1UM2A 1AT0A 1GPPA 2CW7A 2JMZA 2JNQA 4KL6A 2L8LA 1JVAA 2LWYA 3NZMA 1EF0A 4E2UA
chains in the Genus database with same CATH superfamily
2IN9A 4OZ6A 5K08A 2LCJA 4E2TA 2CW8A 1LWSA 1MI8A 2IMZA 4O1RA 2IN8A 1VDEA 2LQMA 1DQ3A 2KEQA 1DFAA 4LX3A 3IFJA 1AM2A 2IN0A 1LWTA 5I0AA 4GIGA 3IGDA 4O1SA 1ZD7A 1ZDEA 4QFQA 4KL5A 1UM2A 1AT0A 1GPPA 2CW7A 2JMZA 2JNQA 4KL6A 2L8LA 1JVAA 2LWYA 3NZMA 1EF0A 4E2UA
chains in the Genus database with same CATH topology
2IN9A 4OZ6A 5K08A 2LCJA 4E2TA 2CW8A 1LWSA 1MI8A 2IMZA 4O1RA 2IN8A 1VDEA 2LQMA 1DQ3A 2KEQA 1DFAA 3IFJA 1AM2A 2IN0A 1LWTA 5I0AA 4GIGA 3IGDA 4O1SA 1ZD7A 1ZDEA 4KL5A 1UM2A 1AT0A 1GPPA 2CW7A 2JMZA 2JNQA 4KL6A 2L8LA 1JVAA 2LWYA 3NZMA 1EF0A 4E2UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IN9 A;  4OZ6 A;  5K08 A;  2LCJ A;  4E2T A;  2CW8 A;  1LWS A;  1MI8 A;  2IMZ A;  4O1R A;  2IN8 A;  1VDE A;  2LQM A;  1DQ3 A;  2KEQ A;  1DFA A;  3IFJ A;  1AM2 A;  2IN0 A;  1LWT A;  5I0A A;  4GIG A;  3IGD A;  4O1S A;  1ZD7 A;  1ZDE A;  4KL5 A;  1UM2 A;  1AT0 A;  1GPP A;  2CW7 A;  2JMZ A;  2JNQ A;  4KL6 A;  2L8L A;  1JVA A;  2LWY A;  3NZM A;  1EF0 A;  4E2U A; 
#chains in the Genus database with same CATH topology
 2IN9 A;  4OZ6 A;  5K08 A;  2LCJ A;  4E2T A;  2CW8 A;  1LWS A;  1MI8 A;  2IMZ A;  4O1R A;  2IN8 A;  1VDE A;  2LQM A;  1DQ3 A;  2KEQ A;  1DFA A;  4LX3 A;  3IFJ A;  1AM2 A;  2IN0 A;  1LWT A;  5I0A A;  4GIG A;  3IGD A;  4O1S A;  1ZD7 A;  1ZDE A;  4QFQ A;  4KL5 A;  1UM2 A;  1AT0 A;  1GPP A;  2CW7 A;  2JMZ A;  2JNQ A;  4KL6 A;  2L8L A;  1JVA A;  2LWY A;  3NZM A;  1EF0 A;  4E2U A; 
#chains in the Genus database with same CATH homology
 2IN9 A;  4OZ6 A;  5K08 A;  2LCJ A;  4E2T A;  2CW8 A;  1LWS A;  1MI8 A;  2IMZ A;  4O1R A;  2IN8 A;  1VDE A;  2LQM A;  1DQ3 A;  2KEQ A;  1DFA A;  3IFJ A;  1AM2 A;  2IN0 A;  1LWT A;  5I0A A;  4GIG A;  3IGD A;  4O1S A;  1ZD7 A;  1ZDE A;  4KL5 A;  1UM2 A;  1AT0 A;  1GPP A;  2CW7 A;  2JMZ A;  2JNQ A;  4KL6 A;  2L8L A;  1JVA A;  2LWY A;  3NZM A;  1EF0 A;  4E2U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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