1GPP | Genus

Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	50
sequence length	229
structure length	217
Chain Sequence	SACFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGSETMYSVVQKSMPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPVSEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPIGAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Endonuclease
source organism	Saccharomyces cerevisiae
publication title	High Resolution Crystal Structure of Domain I of the Saccharomyces Cerevisiae Homing Endonuclease Pi-Scei pubmed doi rcsb
molecule keywords	ENDONUCLEASE PI-SCEI
total genus	50
structure length	217
sequence length	229
ec nomenclature	ec 7.1.2.2: H(+)-transporting two-sector ATPase.
pdb deposition date	2001-11-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	1gppA00

4O1RA 5I0AA 2IN9A 2JMZA 4GIGA 2LWYA 4O1SA 5K08A 1LWTA 1AT0A 1UM2A 2LQMA 2KEQA 4E2TA 1LWSA 1EF0A 2IN8A 3IFJA 1MI8A 3IGDA 4OZ6A 1VDEA 1DQ3A 1ZD7A 2L8LA 1AM2A 1DFAA 3NZMA 1JVAA 2CW7A 2IMZA 2JNQA 2IN0A 4E2UA 1ZDEA 2CW8A 2LCJA 1GPPA 4KL5A 4KL6A
chains in the Genus database with same CATH superfamily

4O1RA 5I0AA 2IN9A 2JMZA 4GIGA 2LWYA 4O1SA 5K08A 1LWTA 1AT0A 1UM2A 4QFQA 4LX3A 2LQMA 2KEQA 4E2TA 1LWSA 1EF0A 2IN8A 3IFJA 1MI8A 3IGDA 4OZ6A 1VDEA 1DQ3A 1ZD7A 2L8LA 1AM2A 1DFAA 3NZMA 1JVAA 2CW7A 2IMZA 2JNQA 2IN0A 4E2UA 1ZDEA 2CW8A 2LCJA 1GPPA 4KL5A 4KL6A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4O1R A;  5I0A A;  2IN9 A;  2JMZ A;  4GIG A;  2LWY A;  4O1S A;  5K08 A;  1LWT A;  1AT0 A;  1UM2 A;  2LQM A;  2KEQ A;  4E2T A;  1LWS A;  1EF0 A;  2IN8 A;  3IFJ A;  1MI8 A;  3IGD A;  4OZ6 A;  1VDE A;  1DQ3 A;  1ZD7 A;  2L8L A;  1AM2 A;  1DFA A;  3NZM A;  1JVA A;  2CW7 A;  2IMZ A;  2JNQ A;  2IN0 A;  4E2U A;  1ZDE A;  2CW8 A;  2LCJ A;  1GPP A;  4KL5 A;  4KL6 A; 
#chains in the Genus database with same CATH topology
 4O1R A;  5I0A A;  2IN9 A;  2JMZ A;  4GIG A;  2LWY A;  4O1S A;  5K08 A;  1LWT A;  1AT0 A;  1UM2 A;  4QFQ A;  4LX3 A;  2LQM A;  2KEQ A;  4E2T A;  1LWS A;  1EF0 A;  2IN8 A;  3IFJ A;  1MI8 A;  3IGD A;  4OZ6 A;  1VDE A;  1DQ3 A;  1ZD7 A;  2L8L A;  1AM2 A;  1DFA A;  3NZM A;  1JVA A;  2CW7 A;  2IMZ A;  2JNQ A;  2IN0 A;  4E2U A;  1ZDE A;  2CW8 A;  2LCJ A;  1GPP A;  4KL5 A;  4KL6 A; 
#chains in the Genus database with same CATH homology
 4O1R A;  5I0A A;  2IN9 A;  2JMZ A;  4GIG A;  2LWY A;  4O1S A;  5K08 A;  1LWT A;  1AT0 A;  1UM2 A;  2LQM A;  2KEQ A;  4E2T A;  1LWS A;  1EF0 A;  2IN8 A;  3IFJ A;  1MI8 A;  3IGD A;  4OZ6 A;  1VDE A;  1DQ3 A;  1ZD7 A;  2L8L A;  1AM2 A;  1DFA A;  3NZM A;  1JVA A;  2CW7 A;  2IMZ A;  2JNQ A;  2IN0 A;  4E2U A;  1ZDE A;  2CW8 A;  2LCJ A;  1GPP A;  4KL5 A;  4KL6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GPPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN