1MI8A

2.0 angstrom crystal structure of a dnab intein from synechocystis sp. pcc 6803
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
158
structure length
141
Chain Sequence
SGAISGDSLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLGRTIKATANHRFLTIDGWKRLDELSLKEHIALPRKSDISWDSIVSITETGVEEVFDLTVPGPHNFVANDIIVHASI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing
pubmed doi rcsb
molecule tags Hydrolase
source organism Synechocystis sp.
molecule keywords DnaB intein
total genus 35
structure length 141
sequence length 158
ec nomenclature ec 3.6.4.12: DNA helicase.
pdb deposition date 2002-08-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 1mi8A00
2IN8A 2JNQA 5I0AA 1AT0A 2JMZA 2LCJA 2KEQA 1AM2A 2IN0A 2IN9A 2LQMA 1MI8A 4OZ6A 3IFJA 1ZDEA 4O1RA 4E2UA 3IGDA 1LWTA 2CW8A 1ZD7A 4E2TA 1LWSA 1JVAA 1DQ3A 1UM2A 3NZMA 4GIGA 2CW7A 1VDEA 2IMZA 1EF0A 5K08A 4KL5A 4O1SA 1GPPA 2LWYA 1DFAA 4KL6A 2L8LA
chains in the Genus database with same CATH superfamily
2IN8A 2JNQA 5I0AA 1AT0A 2JMZA 4QFQA 2LCJA 2KEQA 1AM2A 2IN0A 2IN9A 2LQMA 1MI8A 4OZ6A 3IFJA 1ZDEA 4O1RA 4E2UA 3IGDA 1LWTA 2CW8A 1ZD7A 4E2TA 1LWSA 4LX3A 1JVAA 1DQ3A 1UM2A 3NZMA 4GIGA 2CW7A 1VDEA 2IMZA 1EF0A 5K08A 4KL5A 4O1SA 1GPPA 2LWYA 1DFAA 4KL6A 2L8LA
chains in the Genus database with same CATH topology
2IN8A 2JNQA 5I0AA 1AT0A 2JMZA 2LCJA 2KEQA 1AM2A 2IN0A 2IN9A 2LQMA 1MI8A 4OZ6A 3IFJA 1ZDEA 4O1RA 4E2UA 3IGDA 1LWTA 2CW8A 1ZD7A 4E2TA 1LWSA 1JVAA 1DQ3A 1UM2A 3NZMA 4GIGA 2CW7A 1VDEA 2IMZA 1EF0A 5K08A 4KL5A 4O1SA 1GPPA 2LWYA 1DFAA 4KL6A 2L8LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IN8 A;  2JNQ A;  5I0A A;  1AT0 A;  2JMZ A;  2LCJ A;  2KEQ A;  1AM2 A;  2IN0 A;  2IN9 A;  2LQM A;  1MI8 A;  4OZ6 A;  3IFJ A;  1ZDE A;  4O1R A;  4E2U A;  3IGD A;  1LWT A;  2CW8 A;  1ZD7 A;  4E2T A;  1LWS A;  1JVA A;  1DQ3 A;  1UM2 A;  3NZM A;  4GIG A;  2CW7 A;  1VDE A;  2IMZ A;  1EF0 A;  5K08 A;  4KL5 A;  4O1S A;  1GPP A;  2LWY A;  1DFA A;  4KL6 A;  2L8L A; 
#chains in the Genus database with same CATH topology
 2IN8 A;  2JNQ A;  5I0A A;  1AT0 A;  2JMZ A;  4QFQ A;  2LCJ A;  2KEQ A;  1AM2 A;  2IN0 A;  2IN9 A;  2LQM A;  1MI8 A;  4OZ6 A;  3IFJ A;  1ZDE A;  4O1R A;  4E2U A;  3IGD A;  1LWT A;  2CW8 A;  1ZD7 A;  4E2T A;  1LWS A;  4LX3 A;  1JVA A;  1DQ3 A;  1UM2 A;  3NZM A;  4GIG A;  2CW7 A;  1VDE A;  2IMZ A;  1EF0 A;  5K08 A;  4KL5 A;  4O1S A;  1GPP A;  2LWY A;  1DFA A;  4KL6 A;  2L8L A; 
#chains in the Genus database with same CATH homology
 2IN8 A;  2JNQ A;  5I0A A;  1AT0 A;  2JMZ A;  2LCJ A;  2KEQ A;  1AM2 A;  2IN0 A;  2IN9 A;  2LQM A;  1MI8 A;  4OZ6 A;  3IFJ A;  1ZDE A;  4O1R A;  4E2U A;  3IGD A;  1LWT A;  2CW8 A;  1ZD7 A;  4E2T A;  1LWS A;  1JVA A;  1DQ3 A;  1UM2 A;  3NZM A;  4GIG A;  2CW7 A;  1VDE A;  2IMZ A;  1EF0 A;  5K08 A;  4KL5 A;  4O1S A;  1GPP A;  2LWY A;  1DFA A;  4KL6 A;  2L8L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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