The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
35
|
sequence length |
158
|
structure length |
141
|
Chain Sequence |
SGAISGDSLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLGRTIKATANHRFLTIDGWKRLDELSLKEHIALPRKSDISWDSIVSITETGVEEVFDLTVPGPHNFVANDIIVHASI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Synechocystis sp.
|
| molecule keywords |
DnaB intein
|
| total genus |
35
|
| structure length |
141
|
| sequence length |
158
|
| ec nomenclature |
ec
3.6.4.12: DNA helicase. |
| pdb deposition date | 2002-08-22 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Endonuclease - Pi-scei; Chain A, domain 1 | Hedgehog/Intein (Hint) domain |
#chains in the Genus database with same CATH superfamily 4GIG A; 1VDE A; 4O1R A; 4OZ6 A; 4KL5 A; 4E2T A; 1LWS A; 1ZD7 A; 2JMZ A; 2JNQ A; 2CW8 A; 2LQM A; 3IFJ A; 2IMZ A; 2KEQ A; 1AT0 A; 1ZDE A; 3IGD A; 5K08 A; 4KL6 A; 4O1S A; 1GPP A; 3NZM A; 2IN8 A; 2L8L A; 4E2U A; 2LWY A; 1JVA A; 1DFA A; 1EF0 A; 5I0A A; 2IN0 A; 2CW7 A; 1AM2 A; 1LWT A; 1DQ3 A; 1UM2 A; 2LCJ A; 1MI8 A; 2IN9 A; #chains in the Genus database with same CATH topology 4GIG A; 1VDE A; 4O1R A; 4OZ6 A; 4KL5 A; 4E2T A; 1LWS A; 1ZD7 A; 4LX3 A; 2JMZ A; 2JNQ A; 2CW8 A; 2LQM A; 3IFJ A; 2IMZ A; 2KEQ A; 1AT0 A; 1ZDE A; 3IGD A; 5K08 A; 4KL6 A; 4O1S A; 1GPP A; 3NZM A; 2IN8 A; 2L8L A; 4E2U A; 2LWY A; 1JVA A; 1DFA A; 1EF0 A; 5I0A A; 2IN0 A; 2CW7 A; 1AM2 A; 4QFQ A; 1LWT A; 1DQ3 A; 1UM2 A; 2LCJ A; 1MI8 A; 2IN9 A; #chains in the Genus database with same CATH homology 4GIG A; 1VDE A; 4O1R A; 4OZ6 A; 4KL5 A; 4E2T A; 1LWS A; 1ZD7 A; 2JMZ A; 2JNQ A; 2CW8 A; 2LQM A; 3IFJ A; 2IMZ A; 2KEQ A; 1AT0 A; 1ZDE A; 3IGD A; 5K08 A; 4KL6 A; 4O1S A; 1GPP A; 3NZM A; 2IN8 A; 2L8L A; 4E2U A; 2LWY A; 1JVA A; 1DFA A; 1EF0 A; 5I0A A; 2IN0 A; 2CW7 A; 1AM2 A; 1LWT A; 1DQ3 A; 1UM2 A; 2LCJ A; 1MI8 A; 2IN9 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
