1MI8 | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	158
structure length	141
Chain Sequence	SGAISGDSLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLGRTIKATANHRFLTIDGWKRLDELSLKEHIALPRKSDISWDSIVSITETGVEEVFDLTVPGPHNFVANDIIVHASI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 141 atoms

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141 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Synechocystis sp.
publication title	Crystal structure of mini-intein reveals a conserved catalytic module involved in side chain cyclization of asparagine during protein splicing pubmed doi rcsb
molecule keywords	DnaB intein
total genus	35
structure length	141
sequence length	158
ec nomenclature	ec 3.6.4.12: DNA helicase.
pdb deposition date	2002-08-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	1mi8A00

2IN8A 2JMZA 1ZD7A 5I0AA 2IN9A 3IFJA 1DQ3A 2IN0A 4E2TA 1EF0A 2LQMA 2CW7A 4OZ6A 1AT0A 3NZMA 2CW8A 1VDEA 4O1SA 2KEQA 1LWSA 4E2UA 1ZDEA 1DFAA 4GIGA 5K08A 4KL6A 1AM2A 1LWTA 4KL5A 1GPPA 2LWYA 1MI8A 2IMZA 3IGDA 2JNQA 1JVAA 1UM2A 2LCJA 2L8LA 4O1RA
chains in the Genus database with same CATH superfamily

2IN8A 2JMZA 1ZD7A 5I0AA 2IN9A 3IFJA 1DQ3A 2IN0A 4E2TA 1EF0A 2LQMA 2CW7A 4OZ6A 1AT0A 4LX3A 3NZMA 2CW8A 1VDEA 4O1SA 2KEQA 1LWSA 4E2UA 1ZDEA 1DFAA 4GIGA 5K08A 4KL6A 1AM2A 1LWTA 4KL5A 1GPPA 2LWYA 1MI8A 4QFQA 2IMZA 3IGDA 2JNQA 1JVAA 1UM2A 2LCJA 2L8LA 4O1RA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2IN8 A;  2JMZ A;  1ZD7 A;  5I0A A;  2IN9 A;  3IFJ A;  1DQ3 A;  2IN0 A;  4E2T A;  1EF0 A;  2LQM A;  2CW7 A;  4OZ6 A;  1AT0 A;  3NZM A;  2CW8 A;  1VDE A;  4O1S A;  2KEQ A;  1LWS A;  4E2U A;  1ZDE A;  1DFA A;  4GIG A;  5K08 A;  4KL6 A;  1AM2 A;  1LWT A;  4KL5 A;  1GPP A;  2LWY A;  1MI8 A;  2IMZ A;  3IGD A;  2JNQ A;  1JVA A;  1UM2 A;  2LCJ A;  2L8L A;  4O1R A; 
#chains in the Genus database with same CATH topology
 2IN8 A;  2JMZ A;  1ZD7 A;  5I0A A;  2IN9 A;  3IFJ A;  1DQ3 A;  2IN0 A;  4E2T A;  1EF0 A;  2LQM A;  2CW7 A;  4OZ6 A;  1AT0 A;  4LX3 A;  3NZM A;  2CW8 A;  1VDE A;  4O1S A;  2KEQ A;  1LWS A;  4E2U A;  1ZDE A;  1DFA A;  4GIG A;  5K08 A;  4KL6 A;  1AM2 A;  1LWT A;  4KL5 A;  1GPP A;  2LWY A;  1MI8 A;  4QFQ A;  2IMZ A;  3IGD A;  2JNQ A;  1JVA A;  1UM2 A;  2LCJ A;  2L8L A;  4O1R A; 
#chains in the Genus database with same CATH homology
 2IN8 A;  2JMZ A;  1ZD7 A;  5I0A A;  2IN9 A;  3IFJ A;  1DQ3 A;  2IN0 A;  4E2T A;  1EF0 A;  2LQM A;  2CW7 A;  4OZ6 A;  1AT0 A;  3NZM A;  2CW8 A;  1VDE A;  4O1S A;  2KEQ A;  1LWS A;  4E2U A;  1ZDE A;  1DFA A;  4GIG A;  5K08 A;  4KL6 A;  1AM2 A;  1LWT A;  4KL5 A;  1GPP A;  2LWY A;  1MI8 A;  2IMZ A;  3IGD A;  2JNQ A;  1JVA A;  1UM2 A;  2LCJ A;  2L8L A;  4O1R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1MI8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN