1MZLA

Maize nonspecific lipid transfer protein
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
93
structure length
93
Chain Sequence
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
publication title High-resolution crystal structure of the non-specific lipid-transfer protein from maize seedlings.
pubmed doi rcsb
molecule keywords MAIZE NONSPECIFIC LIPID TRANSFER PROTEIN
total genus 27
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 1995-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1mzlA00
2DS2B 5DOMA 1UVBA 1MIDA 2ALGA 2N81A 1UVCA 3GSHA 1RZLA 1TUKA 1BIPA 1AFHA 1FK5A 1FK3A 1LIPA 1JTBA 1SIYA 1MZMA 2B5SA 1UVAA 1SM7A 1BV2A 1BWOA 1T12A 1BE2A 1FK7A 1HSSA 1W2QA 1GH1A 2N2ZA 2MALA 1BEAA 1FK1A 1FK0A 1FK4A 1MZLA 2LVFA 1FK2A 1L6HA 2RKNA 1HYPA 1B1UA 4CVWC 1CZ2A 4XUWA 1PSYA 1FK6A 1BFAA 1N89A 1S6DA 1TMQB 1PNBB
chains in the Genus database with same CATH superfamily
2DS2B 5DOMA 1UVBA 1MIDA 2ALGA 2N81A 3HMJG 1MIYA 1UVCA 3GSHA 1RZLA 1TUKA 1BIPA 1AFHA 1FK5A 1FK3A 1LIPA 1JTBA 2UV8G 1SIYA 1MZMA 2B5SA 1UVAA 1SM7A 1BV2A 1BWOA 1T12A 1BE2A 1FK7A 1MIVA 1HSSA 2VKZG 1W2QA 1GH1A 1MIWA 3H3AA 2N2ZA 2MALA 1BEAA 1FK1A 1FK0A 1FK4A 1MZLA 2LVFA 1FK2A 1L6HA 2RKNA 1HYPA 1B1UA 4CVWC 1CZ2A 4XUWA 1PSYA 1FK6A 1BFAA 1N89A 1S6DA 1TMQB 1PNBB 3H37A
chains in the Genus database with same CATH topology
2DS2B 5DOMA 1UVBA 1MIDA 2ALGA 2N81A 1UVCA 3GSHA 1RZLA 1TUKA 1BIPA 1AFHA 1FK5A 1FK3A 1LIPA 1JTBA 1SIYA 1MZMA 2B5SA 1UVAA 1SM7A 1BV2A 1BWOA 1T12A 1BE2A 1FK7A 1HSSA 1W2QA 1GH1A 2N2ZA 2MALA 1BEAA 1FK1A 1FK0A 1FK4A 1MZLA 2LVFA 1FK2A 1L6HA 2RKNA 1HYPA 1B1UA 4CVWC 1CZ2A 4XUWA 1PSYA 1FK6A 1BFAA 1N89A 1S6DA 1TMQB 1PNBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DS2 B;  5DOM A;  1UVB A;  1MID A;  2ALG A;  2N81 A;  1UVC A;  3GSH A;  1RZL A;  1TUK A;  1BIP A;  1AFH A;  1FK5 A;  1FK3 A;  1LIP A;  1JTB A;  1SIY A;  1MZM A;  2B5S A;  1UVA A;  1SM7 A;  1BV2 A;  1BWO A;  1T12 A;  1BE2 A;  1FK7 A;  1HSS A;  1W2Q A;  1GH1 A;  2N2Z A;  2MAL A;  1BEA A;  1FK1 A;  1FK0 A;  1FK4 A;  1MZL A;  2LVF A;  1FK2 A;  1L6H A;  2RKN A;  1HYP A;  1B1U A;  4CVW C;  1CZ2 A;  4XUW A;  1PSY A;  1FK6 A;  1BFA A;  1N89 A;  1S6D A;  1TMQ B;  1PNB B; 
#chains in the Genus database with same CATH topology
 2DS2 B;  5DOM A;  1UVB A;  1MID A;  2ALG A;  2N81 A;  3HMJ G;  1MIY A;  1UVC A;  3GSH A;  1RZL A;  1TUK A;  1BIP A;  1AFH A;  1FK5 A;  1FK3 A;  1LIP A;  1JTB A;  2UV8 G;  1SIY A;  1MZM A;  2B5S A;  1UVA A;  1SM7 A;  1BV2 A;  1BWO A;  1T12 A;  1BE2 A;  1FK7 A;  1MIV A;  1HSS A;  2VKZ G;  1W2Q A;  1GH1 A;  1MIW A;  3H3A A;  2N2Z A;  2MAL A;  1BEA A;  1FK1 A;  1FK0 A;  1FK4 A;  1MZL A;  2LVF A;  1FK2 A;  1L6H A;  2RKN A;  1HYP A;  1B1U A;  4CVW C;  1CZ2 A;  4XUW A;  1PSY A;  1FK6 A;  1BFA A;  1N89 A;  1S6D A;  1TMQ B;  1PNB B;  3H37 A; 
#chains in the Genus database with same CATH homology
 2DS2 B;  5DOM A;  1UVB A;  1MID A;  2ALG A;  2N81 A;  1UVC A;  3GSH A;  1RZL A;  1TUK A;  1BIP A;  1AFH A;  1FK5 A;  1FK3 A;  1LIP A;  1JTB A;  1SIY A;  1MZM A;  2B5S A;  1UVA A;  1SM7 A;  1BV2 A;  1BWO A;  1T12 A;  1BE2 A;  1FK7 A;  1HSS A;  1W2Q A;  1GH1 A;  2N2Z A;  2MAL A;  1BEA A;  1FK1 A;  1FK0 A;  1FK4 A;  1MZL A;  2LVF A;  1FK2 A;  1L6H A;  2RKN A;  1HYP A;  1B1U A;  4CVW C;  1CZ2 A;  4XUW A;  1PSY A;  1FK6 A;  1BFA A;  1N89 A;  1S6D A;  1TMQ B;  1PNB B; 
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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