1SM7A

Solution structure of the recombinant pronapin precursor, bnib.
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
109
structure length
109
Chain Sequence
QPQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCPFIAI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure and stability against digestion of rproBnIb, a recombinant 2S albumin from rapeseed: relationship to its allergenic properties.
pubmed doi rcsb
molecule tags Plant protein
source organism Brassica napus
molecule keywords recombinant Ib pronapin
total genus 15
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2004-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1sm7A00
2LVFA 5DOMA 1W2QA 1MZMA 1MZLA 1TUKA 1N89A 1FK4A 1FK7A 1FK1A 1BFAA 1RZLA 1FK5A 2ALGA 2N81A 1BIPA 1BWOA 1UVAA 1BEAA 2DS2B 4XUWA 2MALA 1BV2A 1SIYA 1B1UA 1GH1A 1JTBA 1FK2A 1LIPA 1S6DA 2N2ZA 1CZ2A 1UVCA 1FK3A 1BE2A 1UVBA 1T12A 1PSYA 2B5SA 3GSHA 1L6HA 4CVWC 1SM7A 1HSSA 1AFHA 1FK0A 1HYPA 1MIDA 2RKNA 1PNBB 1TMQB 1FK6A
chains in the Genus database with same CATH superfamily
2LVFA 5DOMA 1W2QA 1MZMA 1MZLA 1TUKA 1N89A 1FK4A 1FK7A 1FK1A 1BFAA 1RZLA 1FK5A 2ALGA 2N81A 1BIPA 1BWOA 1UVAA 1BEAA 2DS2B 4XUWA 2MALA 3HMJG 1BV2A 1SIYA 1B1UA 3H37A 1GH1A 1JTBA 1FK2A 1LIPA 1MIYA 1S6DA 2N2ZA 2UV8G 1CZ2A 1UVCA 1FK3A 1MIVA 1BE2A 1UVBA 1T12A 2VKZG 1MIWA 1PSYA 2B5SA 3GSHA 1L6HA 4CVWC 1SM7A 1HSSA 1AFHA 1FK0A 1HYPA 1MIDA 2RKNA 1PNBB 1TMQB 1FK6A 3H3AA
chains in the Genus database with same CATH topology
2LVFA 5DOMA 1W2QA 1MZMA 1MZLA 1TUKA 1N89A 1FK4A 1FK7A 1FK1A 1BFAA 1RZLA 1FK5A 2ALGA 2N81A 1BIPA 1BWOA 1UVAA 1BEAA 2DS2B 4XUWA 2MALA 1BV2A 1SIYA 1B1UA 1GH1A 1JTBA 1FK2A 1LIPA 1S6DA 2N2ZA 1CZ2A 1UVCA 1FK3A 1BE2A 1UVBA 1T12A 1PSYA 2B5SA 3GSHA 1L6HA 4CVWC 1SM7A 1HSSA 1AFHA 1FK0A 1HYPA 1MIDA 2RKNA 1PNBB 1TMQB 1FK6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LVF A;  5DOM A;  1W2Q A;  1MZM A;  1MZL A;  1TUK A;  1N89 A;  1FK4 A;  1FK7 A;  1FK1 A;  1BFA A;  1RZL A;  1FK5 A;  2ALG A;  2N81 A;  1BIP A;  1BWO A;  1UVA A;  1BEA A;  2DS2 B;  4XUW A;  2MAL A;  1BV2 A;  1SIY A;  1B1U A;  1GH1 A;  1JTB A;  1FK2 A;  1LIP A;  1S6D A;  2N2Z A;  1CZ2 A;  1UVC A;  1FK3 A;  1BE2 A;  1UVB A;  1T12 A;  1PSY A;  2B5S A;  3GSH A;  1L6H A;  4CVW C;  1SM7 A;  1HSS A;  1AFH A;  1FK0 A;  1HYP A;  1MID A;  2RKN A;  1PNB B;  1TMQ B;  1FK6 A; 
#chains in the Genus database with same CATH topology
 2LVF A;  5DOM A;  1W2Q A;  1MZM A;  1MZL A;  1TUK A;  1N89 A;  1FK4 A;  1FK7 A;  1FK1 A;  1BFA A;  1RZL A;  1FK5 A;  2ALG A;  2N81 A;  1BIP A;  1BWO A;  1UVA A;  1BEA A;  2DS2 B;  4XUW A;  2MAL A;  3HMJ G;  1BV2 A;  1SIY A;  1B1U A;  3H37 A;  1GH1 A;  1JTB A;  1FK2 A;  1LIP A;  1MIY A;  1S6D A;  2N2Z A;  2UV8 G;  1CZ2 A;  1UVC A;  1FK3 A;  1MIV A;  1BE2 A;  1UVB A;  1T12 A;  2VKZ G;  1MIW A;  1PSY A;  2B5S A;  3GSH A;  1L6H A;  4CVW C;  1SM7 A;  1HSS A;  1AFH A;  1FK0 A;  1HYP A;  1MID A;  2RKN A;  1PNB B;  1TMQ B;  1FK6 A;  3H3A A; 
#chains in the Genus database with same CATH homology
 2LVF A;  5DOM A;  1W2Q A;  1MZM A;  1MZL A;  1TUK A;  1N89 A;  1FK4 A;  1FK7 A;  1FK1 A;  1BFA A;  1RZL A;  1FK5 A;  2ALG A;  2N81 A;  1BIP A;  1BWO A;  1UVA A;  1BEA A;  2DS2 B;  4XUW A;  2MAL A;  1BV2 A;  1SIY A;  1B1U A;  1GH1 A;  1JTB A;  1FK2 A;  1LIP A;  1S6D A;  2N2Z A;  1CZ2 A;  1UVC A;  1FK3 A;  1BE2 A;  1UVB A;  1T12 A;  1PSY A;  2B5S A;  3GSH A;  1L6H A;  4CVW C;  1SM7 A;  1HSS A;  1AFH A;  1FK0 A;  1HYP A;  1MID A;  2RKN A;  1PNB B;  1TMQ B;  1FK6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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