1T12A

Solution structure of a new ltp1
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
91
structure length
91
Chain Sequence
AITCGQVTSNLAPCLAYLRNTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (4-19)AH3 (42-57)AH4 (63-72)O4 (28-73)EMPTYTI1 (87-90)TIV1 (58-61)TIV2 (82-85)TIV3 (86-89)AH2 (26-37)O2 (4-50)O1 (40-42)Updating...
connected with : NaN
molecule tags Lipid transport
source organism Nicotiana tabacum
publication title Solution structure of a tobacco lipid transfer protein exhibiting new biophysical and biological features
pubmed doi rcsb
molecule keywords NONSPECIFIC LIPID-TRANSFER PROTEIN 1
total genus 26
structure length 91
sequence length 91
ec nomenclature
pdb deposition date 2004-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1t12A00
1FK3A 1L6HA 1FK7A 2N2ZA 2N81A 1S6DA 1N89A 1BEAA 1TUKA 1PNBB 1UVBA 1BFAA 1HSSA 2B5SA 2ALGA 1CZ2A 1MIDA 1UVCA 1BIPA 1HYPA 1TMQB 2MALA 2RKNA 1BV2A 1W2QA 1FK6A 1MZMA 1BWOA 1SIYA 1BE2A 1FK0A 1FK1A 2LVFA 1FK4A 1LIPA 1AFHA 5DOMA 4CVWC 1FK2A 1T12A 3GSHA 1SM7A 2DS2B 4XUWA 1GH1A 1RZLA 1FK5A 1PSYA 1MZLA 1JTBA 1B1UA 1UVAA
chains in the Genus database with same CATH superfamily
1FK3A 1L6HA 1FK7A 2N2ZA 2N81A 1S6DA 1N89A 1BEAA 1TUKA 2VKZG 1PNBB 1UVBA 1BFAA 1HSSA 2B5SA 2ALGA 1CZ2A 1MIDA 2UV8G 1UVCA 1BIPA 1HYPA 1TMQB 2MALA 3H3AA 2RKNA 1BV2A 1W2QA 1FK6A 1MIYA 1BWOA 1MZMA 1SIYA 1BE2A 1FK0A 1FK1A 2LVFA 1FK4A 1LIPA 1AFHA 1MIVA 5DOMA 4CVWC 1FK2A 1MIWA 1T12A 3GSHA 1SM7A 2DS2B 4XUWA 1GH1A 1RZLA 1FK5A 1PSYA 1MZLA 3H37A 1JTBA 3HMJG 1B1UA 1UVAA
chains in the Genus database with same CATH topology
1FK3A 1L6HA 1FK7A 2N2ZA 2N81A 1S6DA 1N89A 1BEAA 1TUKA 1PNBB 1UVBA 1BFAA 1HSSA 2B5SA 2ALGA 1CZ2A 1MIDA 1UVCA 1BIPA 1HYPA 1TMQB 2MALA 2RKNA 1BV2A 1W2QA 1FK6A 1MZMA 1BWOA 1SIYA 1BE2A 1FK0A 1FK1A 2LVFA 1FK4A 1LIPA 1AFHA 5DOMA 4CVWC 1FK2A 1T12A 3GSHA 1SM7A 2DS2B 4XUWA 1GH1A 1RZLA 1FK5A 1PSYA 1MZLA 1JTBA 1B1UA 1UVAA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1FK3 A;  1L6H A;  1FK7 A;  2N2Z A;  2N81 A;  1S6D A;  1N89 A;  1BEA A;  1TUK A;  1PNB B;  1UVB A;  1BFA A;  1HSS A;  2B5S A;  2ALG A;  1CZ2 A;  1MID A;  1UVC A;  1BIP A;  1HYP A;  1TMQ B;  2MAL A;  2RKN A;  1BV2 A;  1W2Q A;  1FK6 A;  1MZM A;  1BWO A;  1SIY A;  1BE2 A;  1FK0 A;  1FK1 A;  2LVF A;  1FK4 A;  1LIP A;  1AFH A;  5DOM A;  4CVW C;  1FK2 A;  1T12 A;  3GSH A;  1SM7 A;  2DS2 B;  4XUW A;  1GH1 A;  1RZL A;  1FK5 A;  1PSY A;  1MZL A;  1JTB A;  1B1U A;  1UVA A; 
#chains in the Genus database with same CATH topology
 1FK3 A;  1L6H A;  1FK7 A;  2N2Z A;  2N81 A;  1S6D A;  1N89 A;  1BEA A;  1TUK A;  2VKZ G;  1PNB B;  1UVB A;  1BFA A;  1HSS A;  2B5S A;  2ALG A;  1CZ2 A;  1MID A;  2UV8 G;  1UVC A;  1BIP A;  1HYP A;  1TMQ B;  2MAL A;  3H3A A;  2RKN A;  1BV2 A;  1W2Q A;  1FK6 A;  1MIY A;  1BWO A;  1MZM A;  1SIY A;  1BE2 A;  1FK0 A;  1FK1 A;  2LVF A;  1FK4 A;  1LIP A;  1AFH A;  1MIV A;  5DOM A;  4CVW C;  1FK2 A;  1MIW A;  1T12 A;  3GSH A;  1SM7 A;  2DS2 B;  4XUW A;  1GH1 A;  1RZL A;  1FK5 A;  1PSY A;  1MZL A;  3H37 A;  1JTB A;  3HMJ G;  1B1U A;  1UVA A; 
#chains in the Genus database with same CATH homology
 1FK3 A;  1L6H A;  1FK7 A;  2N2Z A;  2N81 A;  1S6D A;  1N89 A;  1BEA A;  1TUK A;  1PNB B;  1UVB A;  1BFA A;  1HSS A;  2B5S A;  2ALG A;  1CZ2 A;  1MID A;  1UVC A;  1BIP A;  1HYP A;  1TMQ B;  2MAL A;  2RKN A;  1BV2 A;  1W2Q A;  1FK6 A;  1MZM A;  1BWO A;  1SIY A;  1BE2 A;  1FK0 A;  1FK1 A;  2LVF A;  1FK4 A;  1LIP A;  1AFH A;  5DOM A;  4CVW C;  1FK2 A;  1T12 A;  3GSH A;  1SM7 A;  2DS2 B;  4XUW A;  1GH1 A;  1RZL A;  1FK5 A;  1PSY A;  1MZL A;  1JTB A;  1B1U A;  1UVA A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite