1T3QB

Crystal structure of quinoline 2-oxidoreductase from pseudomonas putida 86
Total Genus 253
100200300400500600700050100150200250
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
253
sequence length
786
structure length
786
Chain Sequence
MMKHEVVALKKKSIGTSVLRREDTRLLTGRGRYIADLVLSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVAELSQGIVATMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEYEELPAVTGIEAALEGEARANDTLAGNVVSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPEDFPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPDIRIRHLETPSPLVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQERP
100200300400500600700600400200
050100150200250Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Active site geometry and substrate recognition of the molybdenum hydroxylase quinoline 2-oxidoreductase.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords quinoline 2-oxidoreductase small subunit
total genus 253
structure length 786
sequence length 786
chains with identical sequence E
ec nomenclature ec 1.3.99.17: Quinoline 2-oxidoreductase.
pdb deposition date 2004-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.20 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde Oxidoreductase; domain 4 1t3qB02
1T3QB
chains in the Genus database with same CATH superfamily
3NVYC 3ETRC 1N62B 3NVZC 2W3RB 1FIQC 4C7YA 4C7ZA 1VDVA 1N60B 1FFVB 1SIJA 1RM6A 2W54B 4USAA 2W55B 1N5WB 1DGJA 3EUB4 3HRDA 3NVWC 3FAHA 1JRPB 4ZOHA 1FFUB 1JROB 1N5XA 1N63B 3AMZA 4US8A 1T3QB 4C80A 3HRDB 3NVVC 4US9A 3FC4A 3L4PA 1SB3A 3NS1C 1V97A 1WYGA 1ZXIB 3AM9A 2W3SB 3SR6C 2E3TA 3B9JC 3AN1A 3NRZC 1FO4A 1N61B 1VLBA
chains in the Genus database with same CATH topology
1T3QB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T3Q B; 
#chains in the Genus database with same CATH topology
 3NVY C;  3ETR C;  1N62 B;  3NVZ C;  2W3R B;  1FIQ C;  4C7Y A;  4C7Z A;  1VDV A;  1N60 B;  1FFV B;  1SIJ A;  1RM6 A;  2W54 B;  4USA A;  2W55 B;  1N5W B;  1DGJ A;  3EUB 4;  3HRD A;  3NVW C;  3FAH A;  1JRP B;  4ZOH A;  1FFU B;  1JRO B;  1N5X A;  1N63 B;  3AMZ A;  4US8 A;  1T3Q B;  4C80 A;  3HRD B;  3NVV C;  4US9 A;  3FC4 A;  3L4P A;  1SB3 A;  3NS1 C;  1V97 A;  1WYG A;  1ZXI B;  3AM9 A;  2W3S B;  3SR6 C;  2E3T A;  3B9J C;  3AN1 A;  3NRZ C;  1FO4 A;  1N61 B;  1VLB A; 
#chains in the Genus database with same CATH homology
 1T3Q B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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