1JROB

Crystal structure of xanthine dehydrogenase from rhodobacter capsulatus
Total Genus 265
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
265
sequence length
776
structure length
760
Chain Sequence
SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPEKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords xanthine dehydrogenase, chain A
publication title Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus
pubmed doi rcsb
source organism Rhodobacter capsulatus
total genus 265
structure length 760
sequence length 776
chains with identical sequence D, F, H
ec nomenclature ec 1.1.1.204: Transferred entry: 1.17.1.4.
pdb deposition date 2001-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB04
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB05
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1jroB01
1ZXIB 3L4PA 4ZOHA 3NS1C 4USAA 1SB3A 3ETRC 1VDVA 4US9A 1WYGA 1N60B 3NRZC 3HRDB 1FFUB 2E3TA 2W55B 2W3SB 3FC4A 1N5WB 3AM9A 1FIQC 1SIJA 4C7ZA 1FO4A 1N5XA 3AN1A 3FAHA 2W54B 3B9JC 1N62B 1VLBA 3AMZA 1JRPB 3HRDA 4US8A 1N63B 4C7YA 2W3RB 3NVYC 1FFVB 3NVZC 1N61B 3EUB4 4C80A 3NVWC 1JROB 3NVVC 1RM6A 1DGJA 3SR6C 1V97A
chains in the Genus database with same CATH superfamily
2WP4A 4ZOHA 2DSJA 4I9AA 3CC4H 1KC8J 1KQSH 3CCEH 4USAA 5HUOA 3C2OA 1VDVA 1VQOH 2OTLH 1Q82J 4X46A 1K9MJ 1VQ9H 3CCRH 4EADA 1FFUB 2Q5WE 5GAEN 3CCSH 2W55B 4IOCJ 1K73J 5HULA 5H1SO 1FIQC 1YTKA 1SIJA 4C7ZA 1YIJH 1Q7YJ 1O4UA 3H5QA 1VLBA 4GA5A 4EAFA 5HL7J 3BIIE 3CMEH 3NVYC 4YEKA 4KWWA 1AZYA 5AYYA 5JVGJ 1YI2H 5DM7J 1M90J 1JJ2H 4C80A 3C2FA 1JROB 1VQ8H 3SR6C 2PA2A 1VQLH 3CD6H 1T3QB 1ZXIB 2QIEA 5GAGN 3GNNA 3PAJA 3PIOJ 3CXCH 2WK6A 1NVIE 2QEXH 1VQPH 4US9A 3J7ZM 1QPRA 1YHQH 3NRZC 3HRDB 3CCVH 3CC7H 4YYYA 1Q86J 2ZJQJ 5AYZA 5EY3A 3AM9A 2B7NA 1S72H 1X1OA 1QPOA 1KD1J 1FO4A 1M1KJ 1N5XA 3AN1A 3FAHA 1YJ9H 1VQ7H 3CCMH 5EP8A 1N62B 4US8A 1WKIA 4GA6A 1N63B 4C7YA 2W3RB 1YJNH 1YITH 3C2RA 1N61B 2I1OA 3G6EH 3NVWC 3NVVC 1FM0E 1W2BH 1VQKH 3CF5J 1DGJA 1NJIJ 1VQ6H 3CCUH 1V97A 5GAHN 3L4PA 1VQMH 4XR5A 5DM6J 5MLCO 4WCEJ 3CMAH 1WYGA 1VQ4H 1N60B 2B7QA 5JVHJ 3CPWH 3FC4A 2W3SB 3G4SH 3CCLH 3OW2H 5AN9F 1N5WB 3TQVA 2B7PA 1OTPA 2ZJPJ 1QVFH 1UOUA 3B9JC 3HRDA 3C2EA 3VMMA 5HUPA 4LHMA 1FFVB 3NVZC 3WO1A 3EUB4 1FMAE 1YJWH 4UY8M 1VQ5H 4AP8A 2WK5A 4GA4A 1RM6A 3C2VA 3G71H 4IOAJ 1QPQA 1QVGH 1K8AJ 3WO0A 4IO9J 3NS1C 1YTDA 3I56H 1VQNH 3PIPJ 1SB3A 3ETRC 2OTJH 3CC2H 2OMDA 4WFBJ 4WFAJ 3CCJH 2I14A 2E3TA 2J0FA 2QA4H 4WFNJ 1QAPA 2JBMA 2ZJRJ 3CCQH 2W54B 4KWVA 5GADN 3RPFA 3WNZA 3AMZA 1JRPB 1Y69K 4WF9J 1BRWA 3L0GA 1N8RJ 1NVJA 2TPTA 3DLLJ 1Q81J 5MPOC 4U67J 1QPNA 1YTEA 3I55H 5AYXA
chains in the Genus database with same CATH topology
1ZXIB 3L4PA 4ZOHA 3NS1C 4USAA 1SB3A 3ETRC 1VDVA 4US9A 1WYGA 1N60B 3NRZC 3HRDB 1FFUB 2E3TA 2W55B 2W3SB 3FC4A 1N5WB 3AM9A 1FIQC 1SIJA 4C7ZA 1FO4A 1N5XA 3AN1A 3FAHA 2W54B 3B9JC 1N62B 1VLBA 3AMZA 1JRPB 3HRDA 4US8A 1N63B 4C7YA 2W3RB 3NVYC 1FFVB 3NVZC 1N61B 3EUB4 4C80A 3NVWC 1JROB 3NVVC 1RM6A 1DGJA 3SR6C 1V97A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZXI B;  3L4P A;  4ZOH A;  3NS1 C;  4USA A;  1SB3 A;  3ETR C;  1VDV A;  4US9 A;  1WYG A;  1N60 B;  3NRZ C;  3HRD B;  1FFU B;  2E3T A;  2W55 B;  2W3S B;  3FC4 A;  1N5W B;  3AM9 A;  1FIQ C;  1SIJ A;  4C7Z A;  1FO4 A;  1N5X A;  3AN1 A;  3FAH A;  2W54 B;  3B9J C;  1N62 B;  1VLB A;  3AMZ A;  1JRP B;  3HRD A;  4US8 A;  1N63 B;  4C7Y A;  2W3R B;  3NVY C;  1FFV B;  3NVZ C;  1N61 B;  3EUB 4;  4C80 A;  3NVW C;  1JRO B;  3NVV C;  1RM6 A;  1DGJ A;  3SR6 C;  1V97 A; 
#chains in the Genus database with same CATH topology
 2WP4 A;  4ZOH A;  2DSJ A;  4I9A A;  3CC4 H;  1KC8 J;  1KQS H;  3CCE H;  4USA A;  5HUO A;  3C2O A;  1VDV A;  1VQO H;  2OTL H;  1Q82 J;  4X46 A;  1K9M J;  1VQ9 H;  3CCR H;  4EAD A;  1FFU B;  2Q5W E;  5GAE N;  3CCS H;  2W55 B;  4IOC J;  1K73 J;  5HUL A;  5H1S O;  1FIQ C;  1YTK A;  1SIJ A;  4C7Z A;  1YIJ H;  1Q7Y J;  1O4U A;  3H5Q A;  1VLB A;  4GA5 A;  4EAF A;  5HL7 J;  3BII E;  3CME H;  3NVY C;  4YEK A;  4KWW A;  1AZY A;  5AYY A;  5JVG J;  1YI2 H;  5DM7 J;  1M90 J;  1JJ2 H;  4C80 A;  3C2F A;  1JRO B;  1VQ8 H;  3SR6 C;  2PA2 A;  1VQL H;  3CD6 H;  1T3Q B;  1ZXI B;  2QIE A;  5GAG N;  3GNN A;  3PAJ A;  3PIO J;  3CXC H;  2WK6 A;  1NVI E;  2QEX H;  1VQP H;  4US9 A;  3J7Z M;  1QPR A;  1YHQ H;  3NRZ C;  3HRD B;  3CCV H;  3CC7 H;  4YYY A;  1Q86 J;  2ZJQ J;  5AYZ A;  5EY3 A;  3AM9 A;  2B7N A;  1S72 H;  1X1O A;  1QPO A;  1KD1 J;  1FO4 A;  1M1K J;  1N5X A;  3AN1 A;  3FAH A;  1YJ9 H;  1VQ7 H;  3CCM H;  5EP8 A;  1N62 B;  4US8 A;  1WKI A;  4GA6 A;  1N63 B;  4C7Y A;  2W3R B;  1YJN H;  1YIT H;  3C2R A;  1N61 B;  2I1O A;  3G6E H;  3NVW C;  3NVV C;  1FM0 E;  1W2B H;  1VQK H;  3CF5 J;  1DGJ A;  1NJI J;  1VQ6 H;  3CCU H;  1V97 A;  5GAH N;  3L4P A;  1VQM H;  4XR5 A;  5DM6 J;  5MLC O;  4WCE J;  3CMA H;  1WYG A;  1VQ4 H;  1N60 B;  2B7Q A;  5JVH J;  3CPW H;  3FC4 A;  2W3S B;  3G4S H;  3CCL H;  3OW2 H;  5AN9 F;  1N5W B;  3TQV A;  2B7P A;  1OTP A;  2ZJP J;  1QVF H;  1UOU A;  3B9J C;  3HRD A;  3C2E A;  3VMM A;  5HUP A;  4LHM A;  1FFV B;  3NVZ C;  3WO1 A;  3EUB 4;  1FMA E;  1YJW H;  4UY8 M;  1VQ5 H;  4AP8 A;  2WK5 A;  4GA4 A;  1RM6 A;  3C2V A;  3G71 H;  4IOA J;  1QPQ A;  1QVG H;  1K8A J;  3WO0 A;  4IO9 J;  3NS1 C;  1YTD A;  3I56 H;  1VQN H;  3PIP J;  1SB3 A;  3ETR C;  2OTJ H;  3CC2 H;  2OMD A;  4WFB J;  4WFA J;  3CCJ H;  2I14 A;  2E3T A;  2J0F A;  2QA4 H;  4WFN J;  1QAP A;  2JBM A;  2ZJR J;  3CCQ H;  2W54 B;  4KWV A;  5GAD N;  3RPF A;  3WNZ A;  3AMZ A;  1JRP B;  1Y69 K;  4WF9 J;  1BRW A;  3L0G A;  1N8R J;  1NVJ A;  2TPT A;  3DLL J;  1Q81 J;  5MPO C;  4U67 J;  1QPN A;  1YTE A;  3I55 H;  5AYX A; 
#chains in the Genus database with same CATH homology
 1ZXI B;  3L4P A;  4ZOH A;  3NS1 C;  4USA A;  1SB3 A;  3ETR C;  1VDV A;  4US9 A;  1WYG A;  1N60 B;  3NRZ C;  3HRD B;  1FFU B;  2E3T A;  2W55 B;  2W3S B;  3FC4 A;  1N5W B;  3AM9 A;  1FIQ C;  1SIJ A;  4C7Z A;  1FO4 A;  1N5X A;  3AN1 A;  3FAH A;  2W54 B;  3B9J C;  1N62 B;  1VLB A;  3AMZ A;  1JRP B;  3HRD A;  4US8 A;  1N63 B;  4C7Y A;  2W3R B;  3NVY C;  1FFV B;  3NVZ C;  1N61 B;  3EUB 4;  4C80 A;  3NVW C;  1JRO B;  3NVV C;  1RM6 A;  1DGJ A;  3SR6 C;  1V97 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...