The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
125
|
structure length |
125
|
Chain Sequence |
GCLPDWSSYKGHCYKVFKKVGTWEDAEKFCVENSGHLASIDSKEEADFVTKLASQTLTKFVYDAWIGLRDESKTQQCSPQWTDGSSVVYENVDEPTKCFGLDVHTEYRTWTDLPCGEKNPFICKS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of von Willebrand factor A1 domain complexed with snake venom, bitiscetin. Insight into glycoprotein Ibalpha binding mechanism induced by snake venom proteins.
pubmed doi rcsb |
| molecule keywords |
bitiscetin alpha chain
|
| molecule tags |
Toxin/blood clotting
|
| source organism |
Homo sapiens
|
| total genus |
32
|
| structure length |
125
|
| sequence length |
125
|
| ec nomenclature | |
| pdb deposition date | 2003-05-22 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00059 | Lectin_C | Lectin C-type domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Mannose-Binding Protein A; Chain A | Mannose-Binding Protein A, subunit A |
#chains in the Genus database with same CATH superfamily 1U0O B; 1AFD 1; 3KMB 1; 3G81 A; 2XR5 A; 4WUX A; 2YHF A; 3WSR A; 1R14 A; 3ALT A; 1MUQ A; 1LIT A; 2MTI A; 3IKP A; 1U0N C; 3FF7 C; 1UMR A; 1SL5 A; 1SB2 B; 4YMD A; 1BV4 A; 4J6J A; 3PBF A; 3P7F A; 3CFW A; 3VYK A; 1RDK 1; 4GK1 A; 1F00 I; 4EZM G; 1EGI A; 2OX9 A; 1JA3 A; 3ZHG D; 4QKJ A; 4MTH A; 1KCG A; 1YPU A; 1RDN 1; 2ORK A; 2RIB A; 3P7H A; 1E5U I; 3L9J C; 1H8U A; 3KQG A; 1ESL A; 1BCH 1; 4C16 A; 1AFB 1; 1UEX B; 3GPR B; 1UMR C; 1DY1 A; 2BRS A; 4QKG A; 1O7B T; 1JZN A; 4N35 A; 1YXJ A; 1TLG A; 3WBP A; 1EGG A; 3DBZ A; 4QKI A; 1B08 A; 3WWK B; 2CL8 A; 1KWY A; 4J6P A; 4WRE A; 4M1G A; 2RID A; 1E8I A; 1BJ3 B; 1XAR A; 3G8L A; 1IXX A; 1WT9 B; 1MSB A; 1G1R A; 2IT5 A; 2GGU A; 2RIE A; 2MSB A; 1BNL A; 3FD4 A; 1K9I A; 2H2R A; 3BX4 A; 1RDO 1; 3CCK A; 4PDC A; 1MPU A; 4J6M A; 3RS1 A; 1JWI B; 4G96 A; 1UOS B; 3P5D A; 3CDG E; 3C22 A; 1WK1 A; 3WBR A; 4M17 A; 1GZ2 A; 1KWT A; 4J6Q A; 1T8C A; 2PF5 A; 3VLG A; 3ZHG A; 5FFR A; 4QKH A; 5FFS A; 1YPQ A; 1IJK C; 4GJX A; 1KWZ A; 1X2T B; 4E52 A; 3NCX A; 1V4L B; 1J34 B; 5B1R A; 1KWW A; 3C8J A; 1DV8 A; 1HQ8 A; 1UEX A; 3CDG F; 5FFT A; 5B1W A; 1U0N B; 1KWU A; 4IOP A; 2RIC A; 4KMB 1; 1RDM 1; 1C3A B; 4M18 A; 2VRP B; 1FIF A; 4GKO G; 3IKQ A; 1BYF A; 1TDQ B; 3FF9 A; 1RDJ 1; 1Y17 A; 2M94 A; 5K8Y A; 1R13 A; 1V7P B; 5LGK E; 1T8D A; 1OZ7 B; 1X2W B; 3BDW B; 1UKM B; 4ZRW A; 2XR6 A; 4GJ0 A; 3G8K A; 3UBU A; 1KG0 C; 4WQQ A; 4WRC A; 1IOD B; 1BUU A; 4J6L A; 2E3X B; 2LS8 A; 3GPR D; 4S0U A; 1FM5 A; 4KZW A; 1KWV A; 4J6K A; 1KZA 1; 4C9F A; 1U0O A; 4N33 A; 3ALS A; 3FF8 C; 4KI1 E; 1DY0 A; 1XPH A; 3G84 A; 2OS9 A; 1RDI 1; 1X2T A; 3P5I A; 2ZQK A; 4PP8 A; 2RIA A; 1HYR A; 3P5H A; 2OX8 A; 1J34 A; 1SB2 A; 4GI0 A; 1E87 A; 2GO0 A; 4N34 A; 4CSY A; 4N32 A; 3HUP A; 3PAR A; 1KZB 1; 3P5G A; 3CAD A; 3ALU A; 1WMY A; 3WH3 A; 2I83 A; 3NCW A; 1UKM A; 1BCJ 1; 3WBQ A; 4WR9 A; 3P5E A; 3WH2 A; 1WMZ A; 3P7G A; 3IKR A; 4WUW A; 3K7B A; 1G1S A; 4KZV A; 1J35 B; 1IJK B; 3GPR A; 1YPO A; 1KX0 A; 2ORJ A; 2BPD A; 4J6N A; 4WCO A; 4ZRV A; 4YLI A; 1RJH A; 2BPH A; 2ZWK A; 2C6U A; 4UWW A; 3WWK A; 2KMB 1; 1KZE 1; 2N40 A; 1IXX B; 1PWB A; 1B6E A; 1BJ3 A; 2BPE A; 1P1Z D; 1DY2 A; 1WT9 A; 1SL6 A; 2ZIB A; 3PAK A; 3BX4 B; 4ZES A; 1YXK A; 2KV3 A; 1FVU B; 4LQF A; 4WRF A; 3G83 A; 3P5F A; 1JWI A; 2H2T B; 1UOS A; 3C8K D; 2E3X C; 5B1X A; 1G1T A; 3WHD A; 3T3A A; 4DN8 A; 1P4L D; 1RTM 1; 2VUZ A; 5M62 A; 3GPR C; 4G9A A; 1PW9 A; 1F02 I; 1KWX A; 4AK8 A; 1RDL 1; 1FIH A; 1CWV A; 5KTI A; 1V4L A; 1KZC 1; 4ZET A; 1J35 A; 4UXM A; 1KZD 1; 2IT6 A; 1AFA 1; 1G1Q A; 1HUP A; 3WWK C; 4IOP B; 2PY2 A; 4N36 A; 3VPP A; 1TN3 A; 5KTH A; 1YTT A; 1C3A A; 3PAQ A; 2VUV A; 2VRP A; 1KOE A; 1Y17 B; 1KMB 1; 1KX1 A; 1O7C T; 4N37 A; 1HTN A; 1K9J A; 1V7P A; 1OZ7 A; 1QDD A; 4LU5 A; 3VYJ A; 1X2W A; 3BDW A; 4N38 A; 3UBU B; 4CAJ A; 5F2Q A; 1QO3 C; 3M9Z A; 2GGX A; 1IOD A; 3IKN A; 1FVU A; 2AFP A; 1SL4 A; 1UV0 A; 5J6G G; #chains in the Genus database with same CATH topology 1U0O B; 1AFD 1; 3KMB 1; 3G81 A; 2XR5 A; 4WUX A; 2YHF A; 3WSR A; 1R14 A; 3ALT A; 1MUQ A; 1LIT A; 2MTI A; 3IKP A; 1U0N C; 3FF7 C; 1UMR A; 1SL5 A; 1SB2 B; 4YMD A; 1BV4 A; 4J6J A; 3PBF A; 3P7F A; 3CFW A; 3VYK A; 1RDK 1; 4GK1 A; 1F00 I; 4EZM G; 1EGI A; 2OX9 A; 1JA3 A; 3ZHG D; 4QKJ A; 4MTH A; 1KCG A; 1YPU A; 1RDN 1; 2ORK A; 2RIB A; 3P7H A; 1E5U I; 3L9J C; 1H8U A; 3KQG A; 1ESL A; 1BCH 1; 4C16 A; 1AFB 1; 1UEX B; 3GPR B; 1UMR C; 1DY1 A; 2BRS A; 4QKG A; 1O7B T; 1JZN A; 4N35 A; 1YXJ A; 1TLG A; 3WBP A; 1EGG A; 3DBZ A; 4QKI A; 1B08 A; 3WWK B; 2CL8 A; 1KWY A; 4J6P A; 4WRE A; 4M1G A; 2RID A; 1E8I A; 1BJ3 B; 1XAR A; 3G8L A; 1IXX A; 1WT9 B; 1MSB A; 1G1R A; 2IT5 A; 2GGU A; 2RIE A; 2MSB A; 1BNL A; 3FD4 A; 1K9I A; 2H2R A; 3BX4 A; 1RDO 1; 3CCK A; 4PDC A; 1MPU A; 4J6M A; 3RS1 A; 1JWI B; 4G96 A; 1UOS B; 3P5D A; 3CDG E; 3C22 A; 1WK1 A; 3WBR A; 4M17 A; 1GZ2 A; 1KWT A; 4J6Q A; 1T8C A; 2PF5 A; 3VLG A; 3ZHG A; 5FFR A; 4QKH A; 5FFS A; 1YPQ A; 1IJK C; 4GJX A; 1KWZ A; 1X2T B; 4E52 A; 3NCX A; 1V4L B; 1J34 B; 5B1R A; 1KWW A; 3C8J A; 1DV8 A; 1HQ8 A; 1UEX A; 3CDG F; 5FFT A; 5B1W A; 1U0N B; 1KWU A; 4IOP A; 2RIC A; 4KMB 1; 1RDM 1; 1C3A B; 4M18 A; 2VRP B; 1FIF A; 4GKO G; 3IKQ A; 1BYF A; 1TDQ B; 3FF9 A; 1RDJ 1; 1Y17 A; 2M94 A; 5K8Y A; 1R13 A; 1V7P B; 5LGK E; 1T8D A; 1OZ7 B; 1X2W B; 3BDW B; 1UKM B; 4ZRW A; 2XR6 A; 4GJ0 A; 3G8K A; 3UBU A; 1KG0 C; 4WQQ A; 4WRC A; 1IOD B; 1BUU A; 4J6L A; 2E3X B; 2LS8 A; 3GPR D; 4S0U A; 1FM5 A; 4KZW A; 1KWV A; 4J6K A; 1KZA 1; 4C9F A; 1U0O A; 4N33 A; 3ALS A; 3FF8 C; 4KI1 E; 1DY0 A; 1XPH A; 3G84 A; 2OS9 A; 1RDI 1; 1X2T A; 3P5I A; 2ZQK A; 4PP8 A; 2RIA A; 1HYR A; 3P5H A; 2OX8 A; 1J34 A; 1SB2 A; 4GI0 A; 1E87 A; 2GO0 A; 4N34 A; 4CSY A; 4N32 A; 3HUP A; 3PAR A; 1KZB 1; 3P5G A; 3CAD A; 3ALU A; 1WMY A; 3WH3 A; 2I83 A; 3NCW A; 1UKM A; 1BCJ 1; 3WBQ A; 4WR9 A; 3P5E A; 3WH2 A; 1WMZ A; 3P7G A; 3IKR A; 4WUW A; 3K7B A; 1G1S A; 4KZV A; 1J35 B; 1IJK B; 3GPR A; 1YPO A; 1KX0 A; 2ORJ A; 2BPD A; 4J6N A; 4WCO A; 4ZRV A; 4YLI A; 1RJH A; 2BPH A; 2ZWK A; 2C6U A; 4UWW A; 3WWK A; 2KMB 1; 1KZE 1; 2N40 A; 1IXX B; 1PWB A; 1B6E A; 1BJ3 A; 2BPE A; 1P1Z D; 1DY2 A; 1WT9 A; 1SL6 A; 2ZIB A; 3PAK A; 3BX4 B; 4ZES A; 1YXK A; 2KV3 A; 1FVU B; 4LQF A; 4WRF A; 3G83 A; 3P5F A; 1JWI A; 2H2T B; 1UOS A; 3C8K D; 2E3X C; 5B1X A; 1G1T A; 3WHD A; 3T3A A; 4DN8 A; 1P4L D; 1RTM 1; 2VUZ A; 5M62 A; 3GPR C; 4G9A A; 1PW9 A; 1F02 I; 1KWX A; 4AK8 A; 1RDL 1; 1FIH A; 1CWV A; 5KTI A; 1V4L A; 1KZC 1; 4ZET A; 1J35 A; 4UXM A; 1KZD 1; 2IT6 A; 1AFA 1; 1G1Q A; 1HUP A; 3WWK C; 4IOP B; 2PY2 A; 4N36 A; 3VPP A; 1TN3 A; 5KTH A; 1YTT A; 1C3A A; 3PAQ A; 2VUV A; 2VRP A; 1KOE A; 1Y17 B; 1KMB 1; 1KX1 A; 1O7C T; 4N37 A; 1HTN A; 1K9J A; 1V7P A; 1OZ7 A; 1QDD A; 4LU5 A; 3VYJ A; 1X2W A; 3BDW A; 4N38 A; 3UBU B; 4CAJ A; 5F2Q A; 1QO3 C; 3M9Z A; 2GGX A; 1IOD A; 3IKN A; 1FVU A; 2AFP A; 1SL4 A; 1UV0 A; 5J6G G; #chains in the Genus database with same CATH homology 1U0O B; 1AFD 1; 3KMB 1; 3G81 A; 2XR5 A; 4WUX A; 2YHF A; 3WSR A; 1R14 A; 3ALT A; 1MUQ A; 1LIT A; 2MTI A; 3IKP A; 1U0N C; 3FF7 C; 1UMR A; 1SL5 A; 1SB2 B; 4YMD A; 1BV4 A; 4J6J A; 3PBF A; 3P7F A; 3CFW A; 3VYK A; 1RDK 1; 4GK1 A; 1F00 I; 4EZM G; 1EGI A; 2OX9 A; 1JA3 A; 3ZHG D; 4QKJ A; 4MTH A; 1KCG A; 1YPU A; 1RDN 1; 2ORK A; 2RIB A; 3P7H A; 1E5U I; 3L9J C; 1H8U A; 3KQG A; 1ESL A; 1BCH 1; 4C16 A; 1AFB 1; 1UEX B; 3GPR B; 1UMR C; 1DY1 A; 2BRS A; 4QKG A; 1O7B T; 1JZN A; 4N35 A; 1YXJ A; 1TLG A; 3WBP A; 1EGG A; 3DBZ A; 4QKI A; 1B08 A; 3WWK B; 2CL8 A; 1KWY A; 4J6P A; 4WRE A; 4M1G A; 2RID A; 1E8I A; 1BJ3 B; 1XAR A; 3G8L A; 1IXX A; 1WT9 B; 1MSB A; 1G1R A; 2IT5 A; 2GGU A; 2RIE A; 2MSB A; 1BNL A; 3FD4 A; 1K9I A; 2H2R A; 3BX4 A; 1RDO 1; 3CCK A; 4PDC A; 1MPU A; 4J6M A; 3RS1 A; 1JWI B; 4G96 A; 1UOS B; 3P5D A; 3CDG E; 3C22 A; 1WK1 A; 3WBR A; 4M17 A; 1GZ2 A; 1KWT A; 4J6Q A; 1T8C A; 2PF5 A; 3VLG A; 3ZHG A; 5FFR A; 4QKH A; 5FFS A; 1YPQ A; 1IJK C; 4GJX A; 1KWZ A; 1X2T B; 4E52 A; 3NCX A; 1V4L B; 1J34 B; 5B1R A; 1KWW A; 3C8J A; 1DV8 A; 1HQ8 A; 1UEX A; 3CDG F; 5FFT A; 5B1W A; 1U0N B; 1KWU A; 4IOP A; 2RIC A; 4KMB 1; 1RDM 1; 1C3A B; 4M18 A; 2VRP B; 1FIF A; 4GKO G; 3IKQ A; 1BYF A; 1TDQ B; 3FF9 A; 1RDJ 1; 1Y17 A; 2M94 A; 5K8Y A; 1R13 A; 1V7P B; 5LGK E; 1T8D A; 1OZ7 B; 1X2W B; 3BDW B; 1UKM B; 4ZRW A; 2XR6 A; 4GJ0 A; 3G8K A; 3UBU A; 1KG0 C; 4WQQ A; 4WRC A; 1IOD B; 1BUU A; 4J6L A; 2E3X B; 2LS8 A; 3GPR D; 4S0U A; 1FM5 A; 4KZW A; 1KWV A; 4J6K A; 1KZA 1; 4C9F A; 1U0O A; 4N33 A; 3ALS A; 3FF8 C; 4KI1 E; 1DY0 A; 1XPH A; 3G84 A; 2OS9 A; 1RDI 1; 1X2T A; 3P5I A; 2ZQK A; 4PP8 A; 2RIA A; 1HYR A; 3P5H A; 2OX8 A; 1J34 A; 1SB2 A; 4GI0 A; 1E87 A; 2GO0 A; 4N34 A; 4CSY A; 4N32 A; 3HUP A; 3PAR A; 1KZB 1; 3P5G A; 3CAD A; 3ALU A; 1WMY A; 3WH3 A; 2I83 A; 3NCW A; 1UKM A; 1BCJ 1; 3WBQ A; 4WR9 A; 3P5E A; 3WH2 A; 1WMZ A; 3P7G A; 3IKR A; 4WUW A; 3K7B A; 1G1S A; 4KZV A; 1J35 B; 1IJK B; 3GPR A; 1YPO A; 1KX0 A; 2ORJ A; 2BPD A; 4J6N A; 4WCO A; 4ZRV A; 4YLI A; 1RJH A; 2BPH A; 2ZWK A; 2C6U A; 4UWW A; 3WWK A; 2KMB 1; 1KZE 1; 2N40 A; 1IXX B; 1PWB A; 1B6E A; 1BJ3 A; 2BPE A; 1P1Z D; 1DY2 A; 1WT9 A; 1SL6 A; 2ZIB A; 3PAK A; 3BX4 B; 4ZES A; 1YXK A; 2KV3 A; 1FVU B; 4LQF A; 4WRF A; 3G83 A; 3P5F A; 1JWI A; 2H2T B; 1UOS A; 3C8K D; 2E3X C; 5B1X A; 1G1T A; 3WHD A; 3T3A A; 4DN8 A; 1P4L D; 1RTM 1; 2VUZ A; 5M62 A; 3GPR C; 4G9A A; 1PW9 A; 1F02 I; 1KWX A; 4AK8 A; 1RDL 1; 1FIH A; 1CWV A; 5KTI A; 1V4L A; 1KZC 1; 4ZET A; 1J35 A; 4UXM A; 1KZD 1; 2IT6 A; 1AFA 1; 1G1Q A; 1HUP A; 3WWK C; 4IOP B; 2PY2 A; 4N36 A; 3VPP A; 1TN3 A; 5KTH A; 1YTT A; 1C3A A; 3PAQ A; 2VUV A; 2VRP A; 1KOE A; 1Y17 B; 1KMB 1; 1KX1 A; 1O7C T; 4N37 A; 1HTN A; 1K9J A; 1V7P A; 1OZ7 A; 1QDD A; 4LU5 A; 3VYJ A; 1X2W A; 3BDW A; 4N38 A; 3UBU B; 4CAJ A; 5F2Q A; 1QO3 C; 3M9Z A; 2GGX A; 1IOD A; 3IKN A; 1FVU A; 2AFP A; 1SL4 A; 1UV0 A; 5J6G G;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
