1YTFC

Yeast tfiia/tbp/dna complex
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
46
structure length
46
Chain Sequence
ENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEWV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription/dna
molecule keywords DNA (5'-D(*TP*GP*TP*AP*TP*GP*TP*AP*TP*AP*TP*AP*AP*AP*AP*C)-3
publication title Crystal structure of a yeast TFIIA/TBP/DNA complex.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 7
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 1996-04-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.18.10 Mainly Beta Roll TATA box binding Protein, subunit D; domain 2 Transcription factor IIA (TFIIA), beta-barrel domain 1ytfC00
5IYDO 1RM1B 1RM1C 1NH2D 1YTFD 5IYCO 1NH2C 1YTFC 1NVPC 5IYBO 1NVPD
chains in the Genus database with same CATH superfamily
5IYDO 1RM1B 1RM1C 1NH2D 1YTFD 5IYCO 1NH2C 1YTFC 1NVPC 5IYBO 1NVPD
chains in the Genus database with same CATH topology
5IYDO 1RM1B 1RM1C 1NH2D 1YTFD 5IYCO 1NH2C 1YTFC 1NVPC 5IYBO 1NVPD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IYD O;  1RM1 B;  1RM1 C;  1NH2 D;  1YTF D;  5IYC O;  1NH2 C;  1YTF C;  1NVP C;  5IYB O;  1NVP D; 
#chains in the Genus database with same CATH topology
 5IYD O;  1RM1 B;  1RM1 C;  1NH2 D;  1YTF D;  5IYC O;  1NH2 C;  1YTF C;  1NVP C;  5IYB O;  1NVP D; 
#chains in the Genus database with same CATH homology
 5IYD O;  1RM1 B;  1RM1 C;  1NH2 D;  1YTF D;  5IYC O;  1NH2 C;  1YTF C;  1NVP C;  5IYB O;  1NVP D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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