2IMZA

Crystal structure of mtu reca intein splicing domain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
166
structure length
142
Chain Sequence
LAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAQPRRFDGFMLAEELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic and mutational studies of Mycobacterium tuberculosis recA mini-inteins suggest a pivotal role for a highly conserved aspartate residue.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Endonuclease PI-MtuI
total genus 30
structure length 142
sequence length 166
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2imzA00
4O1SA 2CW8A 2IN9A 1EF0A 2JMZA 1LWTA 2IN0A 4OZ6A 4GIGA 3IGDA 1VDEA 1ZD7A 1MI8A 2LWYA 4KL5A 1LWSA 2JNQA 5K08A 1AM2A 1JVAA 1GPPA 4E2TA 1AT0A 1ZDEA 4E2UA 2IMZA 1DQ3A 2IN8A 1DFAA 4O1RA 3IFJA 5I0AA 2KEQA 1UM2A 3NZMA 2LCJA 4KL6A 2CW7A 2L8LA 2LQMA
chains in the Genus database with same CATH superfamily
4O1SA 2CW8A 2IN9A 1EF0A 2JMZA 1LWTA 2IN0A 4OZ6A 4GIGA 3IGDA 1VDEA 1ZD7A 1MI8A 2LWYA 4KL5A 1LWSA 2JNQA 5K08A 4LX3A 1AM2A 1JVAA 1GPPA 4E2TA 1AT0A 1ZDEA 4E2UA 2IMZA 4QFQA 1DQ3A 2IN8A 1DFAA 4O1RA 3IFJA 5I0AA 2KEQA 1UM2A 3NZMA 2LCJA 4KL6A 2CW7A 2L8LA 2LQMA
chains in the Genus database with same CATH topology
4O1SA 2CW8A 2IN9A 1EF0A 2JMZA 1LWTA 2IN0A 4OZ6A 4GIGA 3IGDA 1VDEA 1ZD7A 1MI8A 2LWYA 4KL5A 1LWSA 2JNQA 5K08A 1AM2A 1JVAA 1GPPA 4E2TA 1AT0A 1ZDEA 4E2UA 2IMZA 1DQ3A 2IN8A 1DFAA 4O1RA 3IFJA 5I0AA 2KEQA 1UM2A 3NZMA 2LCJA 4KL6A 2CW7A 2L8LA 2LQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O1S A;  2CW8 A;  2IN9 A;  1EF0 A;  2JMZ A;  1LWT A;  2IN0 A;  4OZ6 A;  4GIG A;  3IGD A;  1VDE A;  1ZD7 A;  1MI8 A;  2LWY A;  4KL5 A;  1LWS A;  2JNQ A;  5K08 A;  1AM2 A;  1JVA A;  1GPP A;  4E2T A;  1AT0 A;  1ZDE A;  4E2U A;  2IMZ A;  1DQ3 A;  2IN8 A;  1DFA A;  4O1R A;  3IFJ A;  5I0A A;  2KEQ A;  1UM2 A;  3NZM A;  2LCJ A;  4KL6 A;  2CW7 A;  2L8L A;  2LQM A; 
#chains in the Genus database with same CATH topology
 4O1S A;  2CW8 A;  2IN9 A;  1EF0 A;  2JMZ A;  1LWT A;  2IN0 A;  4OZ6 A;  4GIG A;  3IGD A;  1VDE A;  1ZD7 A;  1MI8 A;  2LWY A;  4KL5 A;  1LWS A;  2JNQ A;  5K08 A;  4LX3 A;  1AM2 A;  1JVA A;  1GPP A;  4E2T A;  1AT0 A;  1ZDE A;  4E2U A;  2IMZ A;  4QFQ A;  1DQ3 A;  2IN8 A;  1DFA A;  4O1R A;  3IFJ A;  5I0A A;  2KEQ A;  1UM2 A;  3NZM A;  2LCJ A;  4KL6 A;  2CW7 A;  2L8L A;  2LQM A; 
#chains in the Genus database with same CATH homology
 4O1S A;  2CW8 A;  2IN9 A;  1EF0 A;  2JMZ A;  1LWT A;  2IN0 A;  4OZ6 A;  4GIG A;  3IGD A;  1VDE A;  1ZD7 A;  1MI8 A;  2LWY A;  4KL5 A;  1LWS A;  2JNQ A;  5K08 A;  1AM2 A;  1JVA A;  1GPP A;  4E2T A;  1AT0 A;  1ZDE A;  4E2U A;  2IMZ A;  1DQ3 A;  2IN8 A;  1DFA A;  4O1R A;  3IFJ A;  5I0A A;  2KEQ A;  1UM2 A;  3NZM A;  2LCJ A;  4KL6 A;  2CW7 A;  2L8L A;  2LQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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