2IMZA

Crystal structure of mtu reca intein splicing domain
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
166
structure length
142
Chain Sequence
LAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAQPRRFDGFMLAEELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic and mutational studies of Mycobacterium tuberculosis recA mini-inteins suggest a pivotal role for a highly conserved aspartate residue.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Endonuclease PI-MtuI
total genus 30
structure length 142
sequence length 166
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2imzA00
3IGDA 1EF0A 3IFJA 4KL6A 1DFAA 2CW8A 1ZDEA 2LWYA 2LCJA 1LWTA 2JNQA 1GPPA 1ZD7A 1JVAA 1LWSA 5K08A 1VDEA 4O1RA 4GIGA 2LQMA 3NZMA 2L8LA 4OZ6A 2CW7A 2IMZA 1DQ3A 1MI8A 4E2TA 1AT0A 5I0AA 1AM2A 2IN9A 2IN0A 1UM2A 2JMZA 2IN8A 2KEQA 4O1SA 4KL5A 4E2UA
chains in the Genus database with same CATH superfamily
3IGDA 1EF0A 3IFJA 4KL6A 1DFAA 2CW8A 1ZDEA 2LWYA 2LCJA 1LWTA 2JNQA 1GPPA 1ZD7A 1JVAA 1LWSA 5K08A 1VDEA 4O1RA 4GIGA 2LQMA 3NZMA 4LX3A 2L8LA 4OZ6A 4QFQA 2CW7A 2IMZA 1DQ3A 1MI8A 4E2TA 1AT0A 5I0AA 1AM2A 2IN9A 2IN0A 1UM2A 2JMZA 2IN8A 2KEQA 4O1SA 4KL5A 4E2UA
chains in the Genus database with same CATH topology
3IGDA 1EF0A 3IFJA 4KL6A 1DFAA 2CW8A 1ZDEA 2LWYA 2LCJA 1LWTA 2JNQA 1GPPA 1ZD7A 1JVAA 1LWSA 5K08A 1VDEA 4O1RA 4GIGA 2LQMA 3NZMA 2L8LA 4OZ6A 2CW7A 2IMZA 1DQ3A 1MI8A 4E2TA 1AT0A 5I0AA 1AM2A 2IN9A 2IN0A 1UM2A 2JMZA 2IN8A 2KEQA 4O1SA 4KL5A 4E2UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IGD A;  1EF0 A;  3IFJ A;  4KL6 A;  1DFA A;  2CW8 A;  1ZDE A;  2LWY A;  2LCJ A;  1LWT A;  2JNQ A;  1GPP A;  1ZD7 A;  1JVA A;  1LWS A;  5K08 A;  1VDE A;  4O1R A;  4GIG A;  2LQM A;  3NZM A;  2L8L A;  4OZ6 A;  2CW7 A;  2IMZ A;  1DQ3 A;  1MI8 A;  4E2T A;  1AT0 A;  5I0A A;  1AM2 A;  2IN9 A;  2IN0 A;  1UM2 A;  2JMZ A;  2IN8 A;  2KEQ A;  4O1S A;  4KL5 A;  4E2U A; 
#chains in the Genus database with same CATH topology
 3IGD A;  1EF0 A;  3IFJ A;  4KL6 A;  1DFA A;  2CW8 A;  1ZDE A;  2LWY A;  2LCJ A;  1LWT A;  2JNQ A;  1GPP A;  1ZD7 A;  1JVA A;  1LWS A;  5K08 A;  1VDE A;  4O1R A;  4GIG A;  2LQM A;  3NZM A;  4LX3 A;  2L8L A;  4OZ6 A;  4QFQ A;  2CW7 A;  2IMZ A;  1DQ3 A;  1MI8 A;  4E2T A;  1AT0 A;  5I0A A;  1AM2 A;  2IN9 A;  2IN0 A;  1UM2 A;  2JMZ A;  2IN8 A;  2KEQ A;  4O1S A;  4KL5 A;  4E2U A; 
#chains in the Genus database with same CATH homology
 3IGD A;  1EF0 A;  3IFJ A;  4KL6 A;  1DFA A;  2CW8 A;  1ZDE A;  2LWY A;  2LCJ A;  1LWT A;  2JNQ A;  1GPP A;  1ZD7 A;  1JVA A;  1LWS A;  5K08 A;  1VDE A;  4O1R A;  4GIG A;  2LQM A;  3NZM A;  2L8L A;  4OZ6 A;  2CW7 A;  2IMZ A;  1DQ3 A;  1MI8 A;  4E2T A;  1AT0 A;  5I0A A;  1AM2 A;  2IN9 A;  2IN0 A;  1UM2 A;  2JMZ A;  2IN8 A;  2KEQ A;  4O1S A;  4KL5 A;  4E2U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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