2IN0A

Crystal structure of mtu reca intein splicing domain
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
139
structure length
139
Chain Sequence
CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGGAILWATPDHKVLTEYGWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFDLEVEELHTLVAEGVVVHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic and mutational studies of Mycobacterium tuberculosis recA mini-inteins suggest a pivotal role for a highly conserved aspartate residue.
pubmed doi rcsb
molecule tags Hydrolase
source organism Mycobacterium tuberculosis
molecule keywords Endonuclease PI-MtuI
total genus 31
structure length 139
sequence length 139
ec nomenclature ec 3.1.-.-:
pdb deposition date 2006-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14890 Intein_splicing Intein splicing domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2in0A00
2LQMA 4KL5A 4GIGA 1UM2A 4O1RA 4E2TA 2CW7A 2LWYA 4E2UA 2IN9A 3IFJA 2JNQA 3IGDA 1AT0A 4OZ6A 1DFAA 1GPPA 2KEQA 4O1SA 1LWTA 1ZDEA 1DQ3A 2CW8A 2JMZA 1LWSA 1AM2A 3NZMA 1JVAA 2IN8A 1EF0A 5I0AA 2IMZA 1MI8A 5K08A 1VDEA 2L8LA 2LCJA 1ZD7A 2IN0A 4KL6A
chains in the Genus database with same CATH superfamily
2LQMA 4KL5A 4GIGA 1UM2A 4O1RA 4E2TA 2CW7A 2LWYA 4E2UA 2IN9A 3IFJA 2JNQA 3IGDA 4QFQA 1AT0A 4OZ6A 1DFAA 1GPPA 2KEQA 4O1SA 1LWTA 1ZDEA 1DQ3A 2CW8A 2JMZA 1LWSA 1AM2A 3NZMA 1JVAA 2IN8A 1EF0A 4LX3A 5I0AA 2IMZA 1MI8A 5K08A 1VDEA 2L8LA 2LCJA 1ZD7A 2IN0A 4KL6A
chains in the Genus database with same CATH topology
2LQMA 4KL5A 4GIGA 1UM2A 4O1RA 4E2TA 2CW7A 2LWYA 4E2UA 2IN9A 3IFJA 2JNQA 3IGDA 1AT0A 4OZ6A 1DFAA 1GPPA 2KEQA 4O1SA 1LWTA 1ZDEA 1DQ3A 2CW8A 2JMZA 1LWSA 1AM2A 3NZMA 1JVAA 2IN8A 1EF0A 5I0AA 2IMZA 1MI8A 5K08A 1VDEA 2L8LA 2LCJA 1ZD7A 2IN0A 4KL6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LQM A;  4KL5 A;  4GIG A;  1UM2 A;  4O1R A;  4E2T A;  2CW7 A;  2LWY A;  4E2U A;  2IN9 A;  3IFJ A;  2JNQ A;  3IGD A;  1AT0 A;  4OZ6 A;  1DFA A;  1GPP A;  2KEQ A;  4O1S A;  1LWT A;  1ZDE A;  1DQ3 A;  2CW8 A;  2JMZ A;  1LWS A;  1AM2 A;  3NZM A;  1JVA A;  2IN8 A;  1EF0 A;  5I0A A;  2IMZ A;  1MI8 A;  5K08 A;  1VDE A;  2L8L A;  2LCJ A;  1ZD7 A;  2IN0 A;  4KL6 A; 
#chains in the Genus database with same CATH topology
 2LQM A;  4KL5 A;  4GIG A;  1UM2 A;  4O1R A;  4E2T A;  2CW7 A;  2LWY A;  4E2U A;  2IN9 A;  3IFJ A;  2JNQ A;  3IGD A;  4QFQ A;  1AT0 A;  4OZ6 A;  1DFA A;  1GPP A;  2KEQ A;  4O1S A;  1LWT A;  1ZDE A;  1DQ3 A;  2CW8 A;  2JMZ A;  1LWS A;  1AM2 A;  3NZM A;  1JVA A;  2IN8 A;  1EF0 A;  4LX3 A;  5I0A A;  2IMZ A;  1MI8 A;  5K08 A;  1VDE A;  2L8L A;  2LCJ A;  1ZD7 A;  2IN0 A;  4KL6 A; 
#chains in the Genus database with same CATH homology
 2LQM A;  4KL5 A;  4GIG A;  1UM2 A;  4O1R A;  4E2T A;  2CW7 A;  2LWY A;  4E2U A;  2IN9 A;  3IFJ A;  2JNQ A;  3IGD A;  1AT0 A;  4OZ6 A;  1DFA A;  1GPP A;  2KEQ A;  4O1S A;  1LWT A;  1ZDE A;  1DQ3 A;  2CW8 A;  2JMZ A;  1LWS A;  1AM2 A;  3NZM A;  1JVA A;  2IN8 A;  1EF0 A;  5I0A A;  2IMZ A;  1MI8 A;  5K08 A;  1VDE A;  2L8L A;  2LCJ A;  1ZD7 A;  2IN0 A;  4KL6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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