2JMZ | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	186
structure length	186
Chain Sequence	MNTGHDGALAYDEPIYLSDGNIINIGEFVDKFFKKYKNSIKKEDNGFGWIDIGNENIYIKSFNKLSLIIEDKRILRVWRKKYSGKLIKITTKNRREITLTHDHPVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGHIYDLTVEDNHTYIAGKNEGFAVSASSGTLHHHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Methanocaldococcus jannaschii
publication title	NMR structure of a KlbA intein precursor from Methanococcus jannaschii pubmed doi rcsb
molecule keywords	Hypothetical protein MJ0781
total genus	31
structure length	186
sequence length	186
ec nomenclature
pdb deposition date	2006-12-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14890	Intein_splicing	Intein splicing domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.16.10	Mainly Beta	Beta Complex	Endonuclease - Pi-scei; Chain A, domain 1	Hedgehog/Intein (Hint) domain	2jmzA01

4KL5A 1DFAA 2IMZA 1AM2A 4E2UA 4E2TA 1JVAA 4GIGA 1ZD7A 2L8LA 1UM2A 2LQMA 1LWTA 3NZMA 4O1SA 2LWYA 1GPPA 3IGDA 4KL6A 2JNQA 5I0AA 2IN8A 1ZDEA 2KEQA 4O1RA 5K08A 1DQ3A 1AT0A 1MI8A 2IN9A 2CW7A 2LCJA 4OZ6A 2IN0A 1VDEA 1EF0A 2JMZA 2CW8A 3IFJA 1LWSA
chains in the Genus database with same CATH superfamily

4KL5A 1DFAA 2IMZA 1AM2A 4E2UA 4E2TA 4QFQA 1JVAA 4GIGA 1ZD7A 2L8LA 1UM2A 2LQMA 1LWTA 3NZMA 4O1SA 2LWYA 1GPPA 3IGDA 4KL6A 2JNQA 4LX3A 2IN8A 5I0AA 1ZDEA 2KEQA 4O1RA 5K08A 1DQ3A 1AT0A 1MI8A 2IN9A 2CW7A 2LCJA 4OZ6A 2IN0A 1VDEA 1EF0A 2JMZA 2CW8A 3IFJA 1LWSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4KL5 A;  1DFA A;  2IMZ A;  1AM2 A;  4E2U A;  4E2T A;  1JVA A;  4GIG A;  1ZD7 A;  2L8L A;  1UM2 A;  2LQM A;  1LWT A;  3NZM A;  4O1S A;  2LWY A;  1GPP A;  3IGD A;  4KL6 A;  2JNQ A;  5I0A A;  2IN8 A;  1ZDE A;  2KEQ A;  4O1R A;  5K08 A;  1DQ3 A;  1AT0 A;  1MI8 A;  2IN9 A;  2CW7 A;  2LCJ A;  4OZ6 A;  2IN0 A;  1VDE A;  1EF0 A;  2JMZ A;  2CW8 A;  3IFJ A;  1LWS A; 
#chains in the Genus database with same CATH topology
 4KL5 A;  1DFA A;  2IMZ A;  1AM2 A;  4E2U A;  4E2T A;  4QFQ A;  1JVA A;  4GIG A;  1ZD7 A;  2L8L A;  1UM2 A;  2LQM A;  1LWT A;  3NZM A;  4O1S A;  2LWY A;  1GPP A;  3IGD A;  4KL6 A;  2JNQ A;  4LX3 A;  2IN8 A;  5I0A A;  1ZDE A;  2KEQ A;  4O1R A;  5K08 A;  1DQ3 A;  1AT0 A;  1MI8 A;  2IN9 A;  2CW7 A;  2LCJ A;  4OZ6 A;  2IN0 A;  1VDE A;  1EF0 A;  2JMZ A;  2CW8 A;  3IFJ A;  1LWS A; 
#chains in the Genus database with same CATH homology
 4KL5 A;  1DFA A;  2IMZ A;  1AM2 A;  4E2U A;  4E2T A;  1JVA A;  4GIG A;  1ZD7 A;  2L8L A;  1UM2 A;  2LQM A;  1LWT A;  3NZM A;  4O1S A;  2LWY A;  1GPP A;  3IGD A;  4KL6 A;  2JNQ A;  5I0A A;  2IN8 A;  1ZDE A;  2KEQ A;  4O1R A;  5K08 A;  1DQ3 A;  1AT0 A;  1MI8 A;  2IN9 A;  2CW7 A;  2LCJ A;  4OZ6 A;  2IN0 A;  1VDE A;  1EF0 A;  2JMZ A;  2CW8 A;  3IFJ A;  1LWS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2JMZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations