2LWYA

Solution structure of bacterial intein-like domain from clostridium thermocellum
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
138
structure length
138
Chain Sequence
SMKAFVAGTMILTATGLVAIENIKAGDKVIATNPETFEVAEKTVLETYVRETTELLHLTIGGEVIKTTFDHPFYVKDVGFVEAGKLQVGDKLLDSRGNVLVVEEKKLEIADKPVKVYNFKVDDFHTYHVGDNEVLVHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for protein trans-splicing by a bacterial intein-like domain - protein ligation without nucleophilic side chains.
pubmed doi rcsb
molecule tags Unknown function
source organism Clostridium thermocellum
molecule keywords BACTERIAL INTEIN-LIKE DOMAIN
total genus 27
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-08-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2lwyA00
1GPPA 1AM2A 1DFAA 2LCJA 4O1RA 1MI8A 1EF0A 2LWYA 2IN9A 2LQMA 5I0AA 1LWSA 3IFJA 4O1SA 4E2UA 1ZD7A 2CW7A 4E2TA 2L8LA 2IN0A 1AT0A 1JVAA 1VDEA 3IGDA 1UM2A 1DQ3A 2CW8A 4OZ6A 2IN8A 4KL6A 3NZMA 2IMZA 1ZDEA 2JMZA 4GIGA 2JNQA 1LWTA 5K08A 4KL5A 2KEQA
chains in the Genus database with same CATH superfamily
1GPPA 1AM2A 1DFAA 2LCJA 4O1RA 1MI8A 1EF0A 2LWYA 2IN9A 2LQMA 5I0AA 1LWSA 3IFJA 4O1SA 4E2UA 1ZD7A 2CW7A 4E2TA 2L8LA 2IN0A 1AT0A 1JVAA 1VDEA 3IGDA 1UM2A 1DQ3A 2CW8A 4OZ6A 2IN8A 4KL6A 4QFQA 3NZMA 2IMZA 1ZDEA 4LX3A 2JMZA 4GIGA 2JNQA 1LWTA 5K08A 4KL5A 2KEQA
chains in the Genus database with same CATH topology
1GPPA 1AM2A 1DFAA 2LCJA 4O1RA 1MI8A 1EF0A 2LWYA 2IN9A 2LQMA 5I0AA 1LWSA 3IFJA 4O1SA 4E2UA 1ZD7A 2CW7A 4E2TA 2L8LA 2IN0A 1AT0A 1JVAA 1VDEA 3IGDA 1UM2A 1DQ3A 2CW8A 4OZ6A 2IN8A 4KL6A 3NZMA 2IMZA 1ZDEA 2JMZA 4GIGA 2JNQA 1LWTA 5K08A 4KL5A 2KEQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPP A;  1AM2 A;  1DFA A;  2LCJ A;  4O1R A;  1MI8 A;  1EF0 A;  2LWY A;  2IN9 A;  2LQM A;  5I0A A;  1LWS A;  3IFJ A;  4O1S A;  4E2U A;  1ZD7 A;  2CW7 A;  4E2T A;  2L8L A;  2IN0 A;  1AT0 A;  1JVA A;  1VDE A;  3IGD A;  1UM2 A;  1DQ3 A;  2CW8 A;  4OZ6 A;  2IN8 A;  4KL6 A;  3NZM A;  2IMZ A;  1ZDE A;  2JMZ A;  4GIG A;  2JNQ A;  1LWT A;  5K08 A;  4KL5 A;  2KEQ A; 
#chains in the Genus database with same CATH topology
 1GPP A;  1AM2 A;  1DFA A;  2LCJ A;  4O1R A;  1MI8 A;  1EF0 A;  2LWY A;  2IN9 A;  2LQM A;  5I0A A;  1LWS A;  3IFJ A;  4O1S A;  4E2U A;  1ZD7 A;  2CW7 A;  4E2T A;  2L8L A;  2IN0 A;  1AT0 A;  1JVA A;  1VDE A;  3IGD A;  1UM2 A;  1DQ3 A;  2CW8 A;  4OZ6 A;  2IN8 A;  4KL6 A;  4QFQ A;  3NZM A;  2IMZ A;  1ZDE A;  4LX3 A;  2JMZ A;  4GIG A;  2JNQ A;  1LWT A;  5K08 A;  4KL5 A;  2KEQ A; 
#chains in the Genus database with same CATH homology
 1GPP A;  1AM2 A;  1DFA A;  2LCJ A;  4O1R A;  1MI8 A;  1EF0 A;  2LWY A;  2IN9 A;  2LQM A;  5I0A A;  1LWS A;  3IFJ A;  4O1S A;  4E2U A;  1ZD7 A;  2CW7 A;  4E2T A;  2L8L A;  2IN0 A;  1AT0 A;  1JVA A;  1VDE A;  3IGD A;  1UM2 A;  1DQ3 A;  2CW8 A;  4OZ6 A;  2IN8 A;  4KL6 A;  3NZM A;  2IMZ A;  1ZDE A;  2JMZ A;  4GIG A;  2JNQ A;  1LWT A;  5K08 A;  4KL5 A;  2KEQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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