2LWYA

Solution structure of bacterial intein-like domain from clostridium thermocellum
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
138
structure length
138
Chain Sequence
SMKAFVAGTMILTATGLVAIENIKAGDKVIATNPETFEVAEKTVLETYVRETTELLHLTIGGEVIKTTFDHPFYVKDVGFVEAGKLQVGDKLLDSRGNVLVVEEKKLEIADKPVKVYNFKVDDFHTYHVGDNEVLVHN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis for protein trans-splicing by a bacterial intein-like domain - protein ligation without nucleophilic side chains.
pubmed doi rcsb
molecule tags Unknown function
source organism Clostridium thermocellum
molecule keywords BACTERIAL INTEIN-LIKE DOMAIN
total genus 27
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-08-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 2lwyA00
4GIGA 1VDEA 4O1RA 4OZ6A 4KL5A 4E2TA 1LWSA 1ZD7A 2JMZA 2JNQA 2CW8A 2LQMA 3IFJA 2IMZA 2KEQA 1AT0A 1ZDEA 3IGDA 5K08A 4KL6A 4O1SA 1GPPA 3NZMA 2IN8A 2L8LA 4E2UA 2LWYA 1JVAA 1DFAA 1EF0A 5I0AA 2IN0A 2CW7A 1AM2A 1LWTA 1DQ3A 1UM2A 2LCJA 1MI8A 2IN9A
chains in the Genus database with same CATH superfamily
4GIGA 1VDEA 4O1RA 4OZ6A 4KL5A 4E2TA 1LWSA 1ZD7A 4LX3A 2JMZA 2JNQA 2CW8A 2LQMA 3IFJA 2IMZA 2KEQA 1AT0A 1ZDEA 3IGDA 5K08A 4KL6A 4O1SA 1GPPA 3NZMA 2IN8A 2L8LA 4E2UA 2LWYA 1JVAA 1DFAA 1EF0A 5I0AA 2IN0A 2CW7A 1AM2A 4QFQA 1LWTA 1DQ3A 1UM2A 2LCJA 1MI8A 2IN9A
chains in the Genus database with same CATH topology
4GIGA 1VDEA 4O1RA 4OZ6A 4KL5A 4E2TA 1LWSA 1ZD7A 2JMZA 2JNQA 2CW8A 2LQMA 3IFJA 2IMZA 2KEQA 1AT0A 1ZDEA 3IGDA 5K08A 4KL6A 4O1SA 1GPPA 3NZMA 2IN8A 2L8LA 4E2UA 2LWYA 1JVAA 1DFAA 1EF0A 5I0AA 2IN0A 2CW7A 1AM2A 1LWTA 1DQ3A 1UM2A 2LCJA 1MI8A 2IN9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GIG A;  1VDE A;  4O1R A;  4OZ6 A;  4KL5 A;  4E2T A;  1LWS A;  1ZD7 A;  2JMZ A;  2JNQ A;  2CW8 A;  2LQM A;  3IFJ A;  2IMZ A;  2KEQ A;  1AT0 A;  1ZDE A;  3IGD A;  5K08 A;  4KL6 A;  4O1S A;  1GPP A;  3NZM A;  2IN8 A;  2L8L A;  4E2U A;  2LWY A;  1JVA A;  1DFA A;  1EF0 A;  5I0A A;  2IN0 A;  2CW7 A;  1AM2 A;  1LWT A;  1DQ3 A;  1UM2 A;  2LCJ A;  1MI8 A;  2IN9 A; 
#chains in the Genus database with same CATH topology
 4GIG A;  1VDE A;  4O1R A;  4OZ6 A;  4KL5 A;  4E2T A;  1LWS A;  1ZD7 A;  4LX3 A;  2JMZ A;  2JNQ A;  2CW8 A;  2LQM A;  3IFJ A;  2IMZ A;  2KEQ A;  1AT0 A;  1ZDE A;  3IGD A;  5K08 A;  4KL6 A;  4O1S A;  1GPP A;  3NZM A;  2IN8 A;  2L8L A;  4E2U A;  2LWY A;  1JVA A;  1DFA A;  1EF0 A;  5I0A A;  2IN0 A;  2CW7 A;  1AM2 A;  4QFQ A;  1LWT A;  1DQ3 A;  1UM2 A;  2LCJ A;  1MI8 A;  2IN9 A; 
#chains in the Genus database with same CATH homology
 4GIG A;  1VDE A;  4O1R A;  4OZ6 A;  4KL5 A;  4E2T A;  1LWS A;  1ZD7 A;  2JMZ A;  2JNQ A;  2CW8 A;  2LQM A;  3IFJ A;  2IMZ A;  2KEQ A;  1AT0 A;  1ZDE A;  3IGD A;  5K08 A;  4KL6 A;  4O1S A;  1GPP A;  3NZM A;  2IN8 A;  2L8L A;  4E2U A;  2LWY A;  1JVA A;  1DFA A;  1EF0 A;  5I0A A;  2IN0 A;  2CW7 A;  1AM2 A;  1LWT A;  1DQ3 A;  1UM2 A;  2LCJ A;  1MI8 A;  2IN9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...