2NM2A

Crystal structure of dihydroneopterin aldolase from s. aureus in complex with (1s,2r)-neopterin at 1.50 angstrom resolution
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
121
structure length
121
Chain Sequence
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (21-25)S1 (4-14)S3 (93-100)S2 (27-36)TI2 (100-103)TVIII1 (91-94)AH2 (39-45)EMPTY3H1 (48-50)TI1 (88-91)AH3 (54-66)AH4 (73-87)S4 (112-119)Updating...
connected with : NaN
publication title Structural basis for the aldolase and epimerase activities of Staphylococcus aureus dihydroneopterin aldolase.
pubmed doi rcsb
molecule keywords Dihydroneopterin aldolase
molecule tags Lyase
source organism Staphylococcus aureus
total genus 24
structure length 121
sequence length 121
chains with identical sequence B, C, D
ec nomenclature ec 4.1.2.25: Dihydroneopterin aldolase.
pdb deposition date 2006-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02152 FolB Dihydroneopterin aldolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 2nm2A00
4FGCA 4GHMA 1FB1A 1A8RA 1NBUB 3RJ4A 1Z9WA 1RRYA 2CG8A 4DU6A 1RSDA 1WURA 3S19A 1RSIA 4AEYA 1RS4A 1RRWA 1WM9A 3O1KA 1NBUA 5FARA 3V9OA 4IQIA 1WPLA 1N3TA 3R2EA 3BP1A 1WUQA 3RZPA 1RRIA 1SQLA 1N3RA 1GTPA 2NM3A 1DHNA 5F3MA 2DHNA 1IS7A 2NM2A 3UXVA 1B9LA 1IS8A 3UXJA 1N3SA 1FBXA 1NBUC 4F8BA 2O90A 1U68A 1RS2A 4UQFA 1A9CA
chains in the Genus database with same CATH superfamily
4FGCA 4GHMA 1FB1A 1A8RA 1NBUB 3RJ4A 1Z9WA 1RRYA 2CG8A 4DU6A 1RSDA 1WURA 3S19A 1RSIA 4AEYA 1RS4A 1RRWA 1WM9A 3O1KA 1NBUA 5FARA 3V9OA 4IQIA 1WPLA 1N3TA 3R2EA 3BP1A 1WUQA 3RZPA 1RRIA 1SQLA 1N3RA 1GTPA 2NM3A 1DHNA 5F3MA 2DHNA 1IS7A 2NM2A 3UXVA 1B9LA 1IS8A 3UXJA 1N3SA 1FBXA 1NBUC 4F8BA 2O90A 1U68A 1RS2A 4UQFA 1A9CA
chains in the Genus database with same CATH topology
4FGCA 4GHMA 1FB1A 1A8RA 1NBUB 3RJ4A 1Z9WA 1RRYA 2CG8A 4DU6A 1RSDA 1WURA 3S19A 1RSIA 4AEYA 1RS4A 1RRWA 1WM9A 3O1KA 1NBUA 5FARA 3V9OA 4IQIA 1WPLA 1N3TA 3R2EA 3BP1A 1WUQA 3RZPA 1RRIA 1SQLA 1N3RA 1GTPA 2NM3A 1DHNA 5F3MA 2DHNA 1IS7A 2NM2A 3UXVA 1B9LA 1IS8A 3UXJA 1N3SA 1FBXA 1NBUC 4F8BA 2O90A 1U68A 1RS2A 4UQFA 1A9CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FGC A;  4GHM A;  1FB1 A;  1A8R A;  1NBU B;  3RJ4 A;  1Z9W A;  1RRY A;  2CG8 A;  4DU6 A;  1RSD A;  1WUR A;  3S19 A;  1RSI A;  4AEY A;  1RS4 A;  1RRW A;  1WM9 A;  3O1K A;  1NBU A;  5FAR A;  3V9O A;  4IQI A;  1WPL A;  1N3T A;  3R2E A;  3BP1 A;  1WUQ A;  3RZP A;  1RRI A;  1SQL A;  1N3R A;  1GTP A;  2NM3 A;  1DHN A;  5F3M A;  2DHN A;  1IS7 A;  2NM2 A;  3UXV A;  1B9L A;  1IS8 A;  3UXJ A;  1N3S A;  1FBX A;  1NBU C;  4F8B A;  2O90 A;  1U68 A;  1RS2 A;  4UQF A;  1A9C A; 
#chains in the Genus database with same CATH topology
 4FGC A;  4GHM A;  1FB1 A;  1A8R A;  1NBU B;  3RJ4 A;  1Z9W A;  1RRY A;  2CG8 A;  4DU6 A;  1RSD A;  1WUR A;  3S19 A;  1RSI A;  4AEY A;  1RS4 A;  1RRW A;  1WM9 A;  3O1K A;  1NBU A;  5FAR A;  3V9O A;  4IQI A;  1WPL A;  1N3T A;  3R2E A;  3BP1 A;  1WUQ A;  3RZP A;  1RRI A;  1SQL A;  1N3R A;  1GTP A;  2NM3 A;  1DHN A;  5F3M A;  2DHN A;  1IS7 A;  2NM2 A;  3UXV A;  1B9L A;  1IS8 A;  3UXJ A;  1N3S A;  1FBX A;  1NBU C;  4F8B A;  2O90 A;  1U68 A;  1RS2 A;  4UQF A;  1A9C A; 
#chains in the Genus database with same CATH homology
 4FGC A;  4GHM A;  1FB1 A;  1A8R A;  1NBU B;  3RJ4 A;  1Z9W A;  1RRY A;  2CG8 A;  4DU6 A;  1RSD A;  1WUR A;  3S19 A;  1RSI A;  4AEY A;  1RS4 A;  1RRW A;  1WM9 A;  3O1K A;  1NBU A;  5FAR A;  3V9O A;  4IQI A;  1WPL A;  1N3T A;  3R2E A;  3BP1 A;  1WUQ A;  3RZP A;  1RRI A;  1SQL A;  1N3R A;  1GTP A;  2NM3 A;  1DHN A;  5F3M A;  2DHN A;  1IS7 A;  2NM2 A;  3UXV A;  1B9L A;  1IS8 A;  3UXJ A;  1N3S A;  1FBX A;  1NBU C;  4F8B A;  2O90 A;  1U68 A;  1RS2 A;  4UQF A;  1A9C A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.