The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
84
|
sequence length |
261
|
structure length |
255
|
Chain Sequence |
YANQYDPSLLQPVPRSLNRNDLHLSATLPFQGCDIWTLYELSWLNQKGLPQVAIGEVSIPATSANLIESKSFKLYLNSYNQTRFASWDEVQTRLVHDLSACAGETVTVNVKSLNEYTAEPIVTMQGECIDDQDIEIANYEFDDALLQGAAQGEEVSEVLHSHLLKSNPDWGSVEIAYHGAKMNREALLRYLVSFREHNEFHEQCVERIFTDIMRYCQPQSLTVYARYTRRGGLDINPFRSSHQSAPNHNQRMARQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
High-resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Vibrio cholerae o1 biovar eltor str. n16961
|
| molecule keywords |
NADPH-dependent 7-cyano-7-deazaguanine reductase
|
| total genus |
84
|
| structure length |
255
|
| sequence length |
261
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
1.7.1.13: PreQ(1) synthase. |
| pdb deposition date | 2007-12-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF14489 | QueF | QueF-like protein |
| A | PF14819 | QueF_N | Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GTP Cyclohydrolase I, domain 2 | GTP Cyclohydrolase I, domain 2 | ||
| Alpha Beta | 2-Layer Sandwich | GTP Cyclohydrolase I, domain 2 | GTP Cyclohydrolase I, domain 2 |
#chains in the Genus database with same CATH superfamily 1Z9W A; 1RSD A; 1FB1 A; 1N3S A; 3R2E A; 4GHM A; 5F3M A; 1NBU C; 3V9O A; 4DU6 A; 1A9C A; 1GTP A; 3RJ4 A; 1WUQ A; 1A8R A; 1RRW A; 2NM2 A; 4AEY A; 4F8B A; 4FGC A; 1IS7 A; 1U68 A; 1NBU B; 1N3T A; 3UXV A; 1WPL A; 1IS8 A; 1RRI A; 3BP1 A; 1WUR A; 2O90 A; 1FBX A; 4IQI A; 5FAR A; 1RS2 A; 2CG8 A; 1B9L A; 3S19 A; 2NM3 A; 1NBU A; 3RZP A; 3UXJ A; 1N3R A; 1RSI A; 4UQF A; 2DHN A; 1WM9 A; 1DHN A; 1RS4 A; 1SQL A; 1RRY A; 3O1K A; #chains in the Genus database with same CATH topology 1Z9W A; 1RSD A; 1FB1 A; 1N3S A; 3R2E A; 4GHM A; 5F3M A; 1NBU C; 3V9O A; 4DU6 A; 1A9C A; 1GTP A; 3RJ4 A; 1WUQ A; 1A8R A; 1RRW A; 2NM2 A; 4AEY A; 4F8B A; 4FGC A; 1IS7 A; 1U68 A; 1NBU B; 1N3T A; 3UXV A; 1WPL A; 1IS8 A; 1RRI A; 3BP1 A; 1WUR A; 2O90 A; 1FBX A; 4IQI A; 5FAR A; 1RS2 A; 2CG8 A; 1B9L A; 3S19 A; 2NM3 A; 1NBU A; 3RZP A; 3UXJ A; 1N3R A; 1RSI A; 4UQF A; 2DHN A; 1WM9 A; 1DHN A; 1RS4 A; 1SQL A; 1RRY A; 3O1K A; #chains in the Genus database with same CATH homology 1Z9W A; 1RSD A; 1FB1 A; 1N3S A; 3R2E A; 4GHM A; 5F3M A; 1NBU C; 3V9O A; 4DU6 A; 1A9C A; 1GTP A; 3RJ4 A; 1WUQ A; 1A8R A; 1RRW A; 2NM2 A; 4AEY A; 4F8B A; 4FGC A; 1IS7 A; 1U68 A; 1NBU B; 1N3T A; 3UXV A; 1WPL A; 1IS8 A; 1RRI A; 3BP1 A; 1WUR A; 2O90 A; 1FBX A; 4IQI A; 5FAR A; 1RS2 A; 2CG8 A; 1B9L A; 3S19 A; 2NM3 A; 1NBU A; 3RZP A; 3UXJ A; 1N3R A; 1RSI A; 4UQF A; 2DHN A; 1WM9 A; 1DHN A; 1RS4 A; 1SQL A; 1RRY A; 3O1K A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
