3BYI | Genus

Total Genus 83

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	83
sequence length	211
structure length	211
Chain Sequence	MRPSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNMAIHMVYQNQIAELMLSEYSKIFG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 211 atoms

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211 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Crystal Structure of Human Rho GTPase Activating Protein 15 (ARHGAP15). rcsb
molecule keywords	Rho GTPase activating protein 15
molecule tags	Signaling protein
source organism	Homo sapiens
total genus	83
structure length	211
sequence length	211
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2008-01-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00620	RhoGAP	RhoGAP domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.555.10	Mainly Alpha	Orthogonal Bundle	Phosphatidylinositol 3-kinase; Chain A	Rho GTPase activation protein	3byiA00

2OVJA 1XA6A 1AM4A 3WPQA 2XS6A 1TX4A 3EAPA 3IUGA 2EE4A 2QV2A 3BYIA 3MSXB 1F7CA 3WPSA 2OSAA 2EE5A 3KUQA 3CXLA 5HPYA 1GRNB 1OW3A 2MBGA 5C2JA 5JCPA 3QISA 5IRCA 1PBWA 5JD0A 3FK2A 5C5SA 1RGPA 2NGRB 3W6RA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2OVJ A;  1XA6 A;  1AM4 A;  3WPQ A;  2XS6 A;  1TX4 A;  3EAP A;  3IUG A;  2EE4 A;  2QV2 A;  3BYI A;  3MSX B;  1F7C A;  3WPS A;  2OSA A;  2EE5 A;  3KUQ A;  3CXL A;  5HPY A;  1GRN B;  1OW3 A;  2MBG A;  5C2J A;  5JCP A;  3QIS A;  5IRC A;  1PBW A;  5JD0 A;  3FK2 A;  5C5S A;  1RGP A;  2NGR B;  3W6R A; 
#chains in the Genus database with same CATH topology
 2OVJ A;  1XA6 A;  1AM4 A;  3WPQ A;  2XS6 A;  1TX4 A;  3EAP A;  3IUG A;  2EE4 A;  2QV2 A;  3BYI A;  3MSX B;  1F7C A;  3WPS A;  2OSA A;  2EE5 A;  3KUQ A;  3CXL A;  5HPY A;  1GRN B;  1OW3 A;  2MBG A;  5C2J A;  5JCP A;  3QIS A;  5IRC A;  1PBW A;  5JD0 A;  3FK2 A;  5C5S A;  1RGP A;  2NGR B;  3W6R A; 
#chains in the Genus database with same CATH homology
 2OVJ A;  1XA6 A;  1AM4 A;  3WPQ A;  2XS6 A;  1TX4 A;  3EAP A;  3IUG A;  2EE4 A;  2QV2 A;  3BYI A;  3MSX B;  1F7C A;  3WPS A;  2OSA A;  2EE5 A;  3KUQ A;  3CXL A;  5HPY A;  1GRN B;  1OW3 A;  2MBG A;  5C2J A;  5JCP A;  3QIS A;  5IRC A;  1PBW A;  5JD0 A;  3FK2 A;  5C5S A;  1RGP A;  2NGR B;  3W6R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BYIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations