3BYIA

Crystal structure of human rho gtpase activating protein 15 (arhgap15)
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
211
structure length
211
Chain Sequence
MRPSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASKNLMSTQSLGIVFGPTLLRAENETGNMAIHMVYQNQIAELMLSEYSKIFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structure of Human Rho GTPase Activating Protein 15 (ARHGAP15).
rcsb
molecule tags Signaling protein
source organism Homo sapiens
molecule keywords Rho GTPase activating protein 15
total genus 83
structure length 211
sequence length 211
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2008-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00620 RhoGAP RhoGAP domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.555.10 Mainly Alpha Orthogonal Bundle Phosphatidylinositol 3-kinase; Chain A Rho GTPase activation protein 3byiA00
2NGRB 3FK2A 5C2JA 5HPYA 1RGPA 3BYIA 3W6RA 2MBGA 2QV2A 3IUGA 3WPSA 2OVJA 5JCPA 1OW3A 1XA6A 5IRCA 3WPQA 5JD0A 1PBWA 2EE5A 3QISA 1TX4A 1GRNB 2EE4A 3KUQA 2XS6A 2OSAA 5C5SA 3MSXB 1F7CA 1AM4A 3CXLA 3EAPA
chains in the Genus database with same CATH superfamily
2NGRB 3FK2A 5C2JA 5HPYA 1RGPA 3BYIA 3W6RA 2MBGA 2QV2A 3IUGA 3WPSA 2OVJA 5JCPA 1OW3A 1XA6A 5IRCA 3WPQA 5JD0A 1PBWA 2EE5A 3QISA 1TX4A 1GRNB 2EE4A 3KUQA 2XS6A 2OSAA 5C5SA 3MSXB 1F7CA 1AM4A 3CXLA 3EAPA
chains in the Genus database with same CATH topology
2NGRB 3FK2A 5C2JA 5HPYA 1RGPA 3BYIA 3W6RA 2MBGA 2QV2A 3IUGA 3WPSA 2OVJA 5JCPA 1OW3A 1XA6A 5IRCA 3WPQA 5JD0A 1PBWA 2EE5A 3QISA 1TX4A 1GRNB 2EE4A 3KUQA 2XS6A 2OSAA 5C5SA 3MSXB 1F7CA 1AM4A 3CXLA 3EAPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NGR B;  3FK2 A;  5C2J A;  5HPY A;  1RGP A;  3BYI A;  3W6R A;  2MBG A;  2QV2 A;  3IUG A;  3WPS A;  2OVJ A;  5JCP A;  1OW3 A;  1XA6 A;  5IRC A;  3WPQ A;  5JD0 A;  1PBW A;  2EE5 A;  3QIS A;  1TX4 A;  1GRN B;  2EE4 A;  3KUQ A;  2XS6 A;  2OSA A;  5C5S A;  3MSX B;  1F7C A;  1AM4 A;  3CXL A;  3EAP A; 
#chains in the Genus database with same CATH topology
 2NGR B;  3FK2 A;  5C2J A;  5HPY A;  1RGP A;  3BYI A;  3W6R A;  2MBG A;  2QV2 A;  3IUG A;  3WPS A;  2OVJ A;  5JCP A;  1OW3 A;  1XA6 A;  5IRC A;  3WPQ A;  5JD0 A;  1PBW A;  2EE5 A;  3QIS A;  1TX4 A;  1GRN B;  2EE4 A;  3KUQ A;  2XS6 A;  2OSA A;  5C5S A;  3MSX B;  1F7C A;  1AM4 A;  3CXL A;  3EAP A; 
#chains in the Genus database with same CATH homology
 2NGR B;  3FK2 A;  5C2J A;  5HPY A;  1RGP A;  3BYI A;  3W6R A;  2MBG A;  2QV2 A;  3IUG A;  3WPS A;  2OVJ A;  5JCP A;  1OW3 A;  1XA6 A;  5IRC A;  3WPQ A;  5JD0 A;  1PBW A;  2EE5 A;  3QIS A;  1TX4 A;  1GRN B;  2EE4 A;  3KUQ A;  2XS6 A;  2OSA A;  5C5S A;  3MSX B;  1F7C A;  1AM4 A;  3CXL A;  3EAP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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